Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exaiptasia_20pallida_20[refseq_20GCF_5F001417965.1_202015-10-28] 4,312 sequences; 256,132,296 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3803 102 7e-17 seq1363 86.0 6e-12 >seq3803 Length=782546 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || |||| || || ||||| || | ||||| ||| | | | Sbjct 742295 ATGCAGATCTTTGTGAAGACTTTAACTGGAAAGACTATCACTTTGGAAGTCGAACCAAGC 742354 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || || || ||| || || ||||||||||| || || || || || Sbjct 742355 GATACTATTGAAAATGTGAAGACGAAA-ATTCAGGACAAAGAAGGCATCCCGCCAGACCA 742413 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||| | ||||| ||||| |||||||| || ||| | | || || || || Sbjct 742414 ACAGCGTCTCATCTTCGCCGGAAAACAGCTTGAAGATGGCCGTACTTTGAGCGACTACAA 742473 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||| | || || | ||| | ||||| Sbjct 742474 CATCCAGAAGGAGTCTACTCTTCACCTTGTACTGAGGTTGAGAGGAGG 742521 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| ||||| || ||||| || || || ||||| ||| | | | Sbjct 742751 ATGCAGATCTTCGTCAAAACACTAACAGGAAAAACAATCACCCTTGAAGTCGAACCAAGC 742810 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| ||||||||||||||||||||| || || || ||||| Sbjct 742811 GATACCATTGAGAATGTAAAGACAAAGATCCAAGACAAAGAAGGCATCCCACCAGATCAG 742870 Query 24824 CAACGT 24829 || ||| Sbjct 742871 CAGCGT 742876 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | || || ||||| ||||| || || || ||| | | | Sbjct 742523 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAAACCATTACCCTTGAGGTCGAACCAAGC 742582 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||| |||||||||||||| || || || || ||| Sbjct 742583 GACACCATTGAGAATGTGAAAACAAAGATTCAAGACAAAGAAGGCATCCCCCCTGACCAA 742642 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || || || || ||||| || || ||| | | || || || ||| Sbjct 742643 CAAAGRCTCATATTYGCTGGAAAACAACTTGAAGATGGCCGTACTTTGAGCGACTACAAC 742702 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || || || || | || || ||||| | ||||| Sbjct 742703 ATCCAGAAAGAGTCCACTCTTCATCTTGTACTGAGATTGAGAGGAGG 742749 >seq1363 Length=349685 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 24697 TGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGA 24756 |||||| |||| |||||| ||||| | || || |||||||| | || |||| || Sbjct 272189 TGATACTATGCTTATCTTTGTTAAACGTATGACTGGAAAAACTATAATACTGAAAGTTGA 272130 Query 24757 AGCCACCGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTC 24815 | | | ||| || | || || | ||| |||| | ||||| |||||||||| | || | Sbjct 272129 ACCAAGCGAAACCATTGAGAATGTTAAGACAATGG-TCCAAAACAAAGAAGGTGTTCCAC 272071 Query 24816 CCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAG 24875 | ||||| || ||| | | |||| ||||| ||||| || ||| |||| | |||| Sbjct 272070 CAGATCAGCAGCGTCTTTTATTTGAAGGGAAGCAGCTTGAAGATGGCAGAAC--TCTCAG 272013 Query 24876 --ATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTT 24915 | ||||||||||| ||| || ||||| || | ||||| Sbjct 272012 TGAGTATAACATTCAGAAGATGTCAACACTTCATCTTGTGTT 271971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449873350519360