Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exaiptasia_20pallida_20[refseq_20GCF_5F001417965.1_202015-10-28] 4,312 sequences; 256,132,296 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3803 161 2e-34 seq1363 96.9 7e-15 seq3797 93.3 8e-14 seq4114 86.0 1e-11 >seq3803 Length=782546 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| | ||| || | ||| |||||||| || ||||| || || || || Sbjct 742521 CCTCCTCTCAACCTCAGTACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 742462 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || ||||| || |||||||| || ||||| || | ||||| ||||| || Sbjct 742461 AAAGTACGGCCATCTTCAAGCTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGCGGG 742402 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || ||||| || | || ||||||||||| ||||| | ||||| ||| Sbjct 742401 ATGCCTTCTTTGTCCTGAATTTTCGTCTTCACATTTTCAATAGTATCGCTTGGTTCGACT 742342 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || ||||| || || || ||||| ||||| |||||||| Sbjct 742341 TCCAAAGTGATAGTCTTTCCAGTTAAAGTCTTCACAAAGATCTGCAT 742295 Score = 158 bits (174), Expect = 2e-33 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| | ||| || | || ||||| || |||||||| || || || || Sbjct 742749 CCTCCTCTCAATCTCAGTACAAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGCTC 742690 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || ||||| |||||||||||||| || || || |||||||| || || || Sbjct 742689 AAAGTACGGCCATCTTCAAGTTGTTTTCCAGCRAATATGAGYCTTTGTTGGTCAGGGGGG 742630 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || ||||||||||||| ||| ||||| ||||| || || | ||||| || Sbjct 742629 ATGCCTTCTTTGTCTTGAATCTTTGTTTTCACATTCTCAATGGTGTCGCTTGGTTCGACC 742570 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || || || || ||||| ||||| || || ||||||||| Sbjct 742569 TCAAGGGTAATGGTTTTTCCCGTCAAAGTCTTGACGAAAATCTGCATT 742522 >seq1363 Length=349685 Score = 96.9 bits (106), Expect = 7e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688 || ||||| ||| ||| ||||||| ||||| |||| || || | || || || Sbjct 271551 ATGTTATAGTCACTGAGAGTTCTACCATCTTCAAGTTTCTTCCCTGTGAAAATAAGAAGC 271610 Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || |||||||| || || ||||| | ||||||||||||| || | || |||||| || Sbjct 271611 TGCTGATCTGGTGGGATGCCTTCTCTGTCTTGAATCTTTGACTTAATATCTTCAATTGTG 271670 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 | | |||| || || | || || |||| ||||||| ||||| ||||| |||||| Sbjct 271671 TTGCTGAGTTCAACGTCAAGGGTGATGATCTTTCCTGTCATGGTCTTAACAAAGATCTGC 271730 Query 82809 ATTATT 82814 ||| || Sbjct 271731 ATTCTT 271736 >seq3797 Length=117913 Score = 93.3 bits (102), Expect = 8e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 198514 TAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATAT 198573 |||||||||||||||| || || || | ||||| | | ||| |||||||||| | | Sbjct 27372 TAGGTTGTATGTGGTCAATATGTGGCATTCATGACCAGGGTTGGGCAGAAAGACCTGTGT 27431 Query 198574 TTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCAT 198633 |||| |||||| | || ||||||||| | |||| | | |||||||||||||| | || Sbjct 27432 TTGGCAAGATACGTTACATGAATTATAAAGGTTGCCAAAGGAAATTTGATGTTGCAGAAT 27491 Query 198634 TTAT 198637 |||| Sbjct 27492 TTAT 27495 >seq4114 Length=678496 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| ||||||||||| || ||||||||| || ||| || ||||| |||||| Sbjct 195478 TGTAGAGTGGATTCTTTCTGAATGTTATAATCACTCAGTGTTCGTCCATCTTCAAGTTGT 195537 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCT 82709 ||||||||||| || || | ||||| ||||| || || ||| Sbjct 195538 TTTCCAGCAAAAATGAGACGCTGTTGGTCTGGTGGGATACCT 195579 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| ||||||||||| || ||||||||| || ||| || ||||| |||||| Sbjct 197725 TGTAGAGTGGATTCTTTCTGAATGTTATAATCACTCAGTGTTCGTCCATCTTCAAGTTGT 197784 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCT 82709 ||||||||||| || || | ||||| ||||| || || ||| Sbjct 197785 TTTCCAGCAAAAATGAGACGCTGTTGGTCTGGTGGGATACCT 197826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981772956501768