Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helobdella_20robusta_20[refseq_20GCF_5F000326865.1_202012-12-20] 1,991 sequences; 235,376,169 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1829 118 1e-21 seq48 96.9 4e-15 >seq1829 Length=5883334 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 33968 ATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027 ||||||||| || || |||||||| || ||||| || ||||| |||||||||| ||||| Sbjct 4220060 ATTTTCATTTACAATCCCATCACTAGCAGCAAAGAAGGCCAAAACATGTTTTACAAAATG 4220119 Query 34028 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 34087 || || || | | || |||||||| || || ||||| ||||| |||||||| Sbjct 4220120 CTTCTCATCATTATTCAACTTGTTCCAATCCGCCATGTCCTTAGACATATCAACTTCTTC 4220179 Query 34088 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGAT 34147 | ||||| || || || || ||| | || || | |||||||||| || | || || Sbjct 4220180 CGTCGTCCAGAAGGACGCTTCGGCCATCTTGTAAAACCTCCAGATGTCCTGGTGTTTTAT 4220239 Query 34148 TGGGAAAATAACAAATCT 34165 || ||||||||||| || Sbjct 4220240 CGGAAAAATAACAAACCT 4220257 Score = 109 bits (120), Expect = 7e-19 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||||||||||||||| ||||| || || || | |||||| |||||||||||||| ||||| Sbjct 4211133 CATAACTCCCATTTTCTGGTACTCTCCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTC 4211192 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATT 33370 || ||||||| |||||||||||||| ||||| Sbjct 4211193 TAAAGATATATGATCCATGAAATCAAATGGATT 4211225 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/160 (74%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 33566 ATGTTTAAACATCAAACATGCGAA-ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATT 33624 || |||||| || ||||| | | ||| || ||| ||| || |||||||| || | | Sbjct 4218208 ATATTTAAATATTAAACAGCAGCATATCA-AGCGCATACC-TCATCTCTACTGATCAGCT 4218265 Query 33625 CGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGA 33684 | || ||||| || |||||||| | ||||| || || | ||||||||| || || | Sbjct 4218266 CATTGCTGAACGTTAGACCGGGCATCACTCCACGTTTCTTCAACCAAAATATAGATGCAA 4218325 Query 33685 ATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 | ||||| ||||| ||||||||||| || || ||||| || Sbjct 4218326 AAGATCCTGAAAAAAAGATTCCTTCGACAGCTGCAAATGC 4218365 >seq48 Length=5140933 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| ||| |||||||| |||||||| || || || || || ||||||||||| || | Sbjct 2581688 CACTGAATGACTTTTTTGTCTCCTTGTGAAGGTTGGACATTGCAATTCTGGCGGCAAGGA 2581629 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 ||||| || || |||| || ||| ||||| ||||| || ||||| |||||| Sbjct 2581628 GAGCATAGTCGGGGTGTTTTGCAGTGAGGGTGGCACAGATTTCTGCAGCCAGGTTGTCCA 2581569 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAG 64173 | || |||||||| || || ||| | ||| ||||| ||||||| Sbjct 2581568 ACTCAACCGTTGTGACACCCGGATACAATCCGCTTATAACTTTCATAG 2581521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629801925414480