Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helobdella_20robusta_20[refseq_20GCF_5F000326865.1_202012-12-20] 1,991 sequences; 235,376,169 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1829 114 2e-20 seq48 87.8 3e-12 seq1 86.0 9e-12 >seq1829 Length=5883334 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 50346 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 ||||||||| || || || ||||| || ||||| || ||||| |||||||||| |||||| Sbjct 4220060 ATTTTCATTTACAATCCCATCACTAGCAGCAAAGAAGGCCAAAACATGTTTTACAAAATG 4220119 Query 50406 TTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 50465 || || | | | || |||||||| || || ||||| ||||| |||||||| Sbjct 4220120 CTTCTCATCATTATTCAACTTGTTCCAATCCGCCATGTCCTTAGACATATCAACTTCTTC 4220179 Query 50466 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGAT 50525 | ||||| || || || || ||| | || || | |||||||||| || | || || Sbjct 4220180 CGTCGTCCAGAAGGACGCTTCGGCCATCTTGTAAAACCTCCAGATGTCCTGGTGTTTTAT 4220239 Query 50526 TGGGAAAATAACAAATCT 50543 || ||||||||||| || Sbjct 4220240 CGGAAAAATAACAAACCT 4220257 Score = 109 bits (120), Expect = 8e-19 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||||||||||||||| ||||| || || || | |||||| |||||||||||||| ||||| Sbjct 4211133 CATAACTCCCATTTTCTGGTACTCTCCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTC 4211192 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATT 49748 || ||||||| |||||||||||||| ||||| Sbjct 4211193 TAAAGATATATGATCCATGAAATCAAATGGATT 4211225 Score = 100 bits (110), Expect = 4e-16 Identities = 126/169 (75%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 49944 ATGTTTAAACATCAAACATGCGAA-ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTT 50002 || |||||| || ||||| | | ||| || ||| ||| || |||||||| || || | Sbjct 4218208 ATATTTAAATATTAAACAGCAGCATATCA-AGCGCATACC-TCATCTCTACTGATCAGCT 4218265 Query 50003 CGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAA 50062 | ||| ||||| || |||||||| | ||||| || || | ||||||||| || |||| Sbjct 4218266 CATTGCTGAACGTTAGACCGGGCATCACTCCACGTTTCTTCAACCAAAATATAGATGCAA 4218325 Query 50063 ATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCT 50111 | || || ||||| ||||||||||| || || ||||| || || | ||| Sbjct 4218326 AAGATCCTGAAAAAAAGATTCCTTCGACAGCTGCAAATGCCACCAATCT 4218374 >seq48 Length=5140933 Score = 87.8 bits (96), Expect = 3e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| ||| |||||||| |||||||| || || || | || ||||||||||| | | Sbjct 2581688 CACTGAATGACTTTTTTGTCTCCTTGTGAAGGTTGGACATTGCAATTCTGGCGGCAAGGA 2581629 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 ||||| || || |||| || ||| ||||| ||||| || ||||| |||||| Sbjct 2581628 GAGCATAGTCGGGGTGTTTTGCAGTGAGGGTGGCACAGATTTCTGCAGCCAGGTTGTCCA 2581569 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 80845 | || |||||||| || || ||| | ||| ||||| ||||||| Sbjct 2581568 ACTCAACCGTTGTGACACCCGGATACAATCCGCTTATAACTTTCATAG 2581521 >seq1 Length=13640604 Score = 86.0 bits (94), Expect = 9e-12 Identities = 99/132 (75%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 79633 CAAACGGCTA-CCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACA 79691 ||| || ||| ||||||||| ||| |||||| || || |||||||||||||| ||||| Sbjct 10681092 CAACCGACTAACCTCATTAGGATCACAATATTGAATAATCTCAGTGCAGAGGTTGCTACA 10681151 Query 79692 CTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 79751 |||||||||| | ||| || || || |||| ||||||| ||||| || | || Sbjct 10681152 TGTAATGGTTCCCAGATTCTGCTGGTTCGACTTTCTGTTACAACTGTCCTTGTACAACAT 10681211 Query 79752 GAACGGAGTACC 79763 | | ||||| || Sbjct 10681212 GTAAGGAGTGCC 10681223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718250924085240