Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helobdella_20robusta_20[refseq_20GCF_5F000326865.1_202012-12-20] 1,991 sequences; 235,376,169 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1829 114 2e-20 seq48 96.9 5e-15 >seq1829 Length=5883334 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42451 ATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 42510 |||||| || || || || ||||| || ||||| || ||||| |||||||||| ||||| Sbjct 4220060 ATTTTCATTTACAATCCCATCACTAGCAGCAAAGAAGGCCAAAACATGTTTTACAAAATG 4220119 Query 42511 TTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 42570 || || || | || || |||||||| || || ||||| ||||| |||||||| Sbjct 4220120 CTTCTCATCATTATTCAACTTGTTCCAATCCGCCATGTCCTTAGACATATCAACTTCTTC 4220179 Query 42571 TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAAT 42630 |||||| || || ||||| ||| | || || | ||||||| || || | || || Sbjct 4220180 CGTCGTCCAGAAGGACGCTTCGGCCATCTTGTAAAACCTCCAGATGTCCTGGTGTTTTAT 4220239 Query 42631 TGGGAAAATAACAAATCT 42648 || ||||||||||| || Sbjct 4220240 CGGAAAAATAACAAACCT 4220257 Score = 107 bits (118), Expect = 3e-18 Identities = 122/160 (76%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 42049 ATGTTTAAACATCAAACATGCGAA-ATCGCAGTGCAGACCCTCATCTCTACTAATTAATT 42107 || |||||| || ||||| | | ||| || ||| ||| ||||||||||| || | | Sbjct 4218208 ATATTTAAATATTAAACAGCAGCATATCA-AGCGCATACC-TCATCTCTACTGATCAGCT 4218265 Query 42108 CGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAA 42167 | ||| ||||| || |||||||| | ||||| || || | |||||||||||| |||| Sbjct 4218266 CATTGCTGAACGTTAGACCGGGCATCACTCCACGTTTCTTCAACCAAAATATAGATGCAA 4218325 Query 42168 ATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 | ||||| ||||| ||||||||||| || || ||||| || Sbjct 4218326 AAGATCCTGAAAAAAAGATTCCTTCGACAGCTGCAAATGC 4218365 Score = 105 bits (116), Expect = 9e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||||||||||||||| ||||| || || || | |||||| ||||||||||| || ||||| Sbjct 4211133 CATAACTCCCATTTTCTGGTACTCTCCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTC 4211192 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATT 41853 || ||||||| |||||||||||||| ||||| Sbjct 4211193 TAAAGATATATGATCCATGAAATCAAATGGATT 4211225 >seq48 Length=5140933 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| ||| |||||||| |||||||| || || || | || ||||||||||| || | Sbjct 2581688 CACTGAATGACTTTTTTGTCTCCTTGTGAAGGTTGGACATTGCAATTCTGGCGGCAAGGA 2581629 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||| || || |||| || ||| ||||| |||||||| ||||| |||||| Sbjct 2581628 GAGCATAGTCGGGGTGTTTTGCAGTGAGGGTGGCACAGATTTCTGCAGCCAGGTTGTCCA 2581569 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 72928 | || |||||||| || || ||| | ||| ||||| ||||||| Sbjct 2581568 ACTCAACCGTTGTGACACCCGGATACAATCCGCTTATAACTTTCATAG 2581521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671122497023160