Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helobdella_20robusta_20[refseq_20GCF_5F000326865.1_202012-12-20]
1,991 sequences; 235,376,169 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq514 102 4e-17
seq1784 96.9 2e-15
seq601 96.9 2e-15
>seq514
Length=9866887
Score = 102 bits (112), Expect = 4e-17
Identities = 67/75 (89%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| || |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 6146254 TTGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 6146313
Query 11515 CTGAGCTAATGGGCC 11529
||||||||| |||||
Sbjct 6146314 CTGAGCTAACGGGCC 6146328
Score = 96.9 bits (106), Expect = 2e-15
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 6167630 GGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACGGG 6167689
Query 11528 CC 11529
||
Sbjct 6167690 CC 6167691
Score = 96.9 bits (106), Expect = 2e-15
Identities = 72/85 (85%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| || |||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 6168063 AAAAAAAAACCTGGCCCGTAGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACG 6168122
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||||||||||||| |||||
Sbjct 6168123 CTCTAACCAACTGAGCTAACGGGCC 6168147
Score = 93.3 bits (102), Expect = 2e-14
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 6164486 TTGGCCCGTAGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 6164545
Query 11515 CTGAGCTAATGGGCC 11529
||||||||| | |||
Sbjct 6164546 CTGAGCTAACGAGCC 6164560
Score = 91.5 bits (100), Expect = 8e-14
Identities = 57/62 (92%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 6166582 GGGTCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACGGG 6166641
Query 11528 CC 11529
||
Sbjct 6166642 CC 6166643
>seq1784
Length=895224
Score = 96.9 bits (106), Expect = 2e-15
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 386871 GGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACGGG 386930
Query 11528 CC 11529
||
Sbjct 386931 CC 386932
>seq601
Length=3052603
Score = 96.9 bits (106), Expect = 2e-15
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2214488 GGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACGGG 2214547
Query 11528 CC 11529
||
Sbjct 2214548 CC 2214549
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261484854834316
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |