Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helobdella_20robusta_20[refseq_20GCF_5F000326865.1_202012-12-20] 1,991 sequences; 235,376,169 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq136 141 1e-29 seq879 95.1 2e-15 seq692 95.1 2e-15 seq1372 86.0 1e-12 >seq136 Length=174414 Score = 141 bits (156), Expect = 1e-29 Identities = 193/267 (72%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || |||||||| | | |||| |||| |||||||| ||||| || || ||||| || Sbjct 75355 GCCAAACGTCATCGTAAAG-TCTTGAGAGACAACATCCAGGGAATTACAAAACCAGCCAT 75413 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||| || | ||||| || || ||| | || || ||| |||| ||||||| Sbjct 75414 TCGTCGTCTGGCACGCAGAGGTGGCGTGAAACGTATTTCCGGTTTGATCTACGAAGAGAC 75473 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | ||| | |||||| ||| ||| |||| ||||||| | ||| ||||| Sbjct 75474 GAGGGGCGTCCTTAAGGTTTTCCTCGAGAACGTCATCCGTGATGCTGTGACCTACACCGA 75533 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | |||||||| || ||||||| | || || || ||||||| || || Sbjct 75534 GCATGCCAAGAGAAAGACTGTTACGGCCATGGACGTGGTTTACGCCCTGAAACGCCAGGG 75593 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||| | | || ||||| || |||| Sbjct 75594 CCGCACTTTGTACGGTTTCGGTGGTTA 75620 >seq879 Length=11666 Score = 95.1 bits (104), Expect = 2e-15 Identities = 181/267 (68%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| | ||| |||| |||||||| || ||||| ||||| || ||| Sbjct 276 GCCAAGCGTCACCGCAAAGTTCTCAGAGACAACATCCAGGGCATCACAAAGCCCGCAATC 335 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| | | || || ||||| || | || || || | || ||||||| Sbjct 336 CGCCGTCTGGCCAGAAGAGGCGGGGTCAAACGCATATCAGGTCTGATATACGAAGAGACC 395 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| | ||| | ||||| | | ||| || || || || || |||||| Sbjct 396 AGAGGCGTTCTCAAGGTGTTCCTTGAAAACGTCATTAGGGACGCCGTCACTTACACCGAG 455 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | || || || || ||||||| |||| || || | || | || || Sbjct 456 CACGCAAAGAGAAAAACCGTAACAGCCATGGACGTCGTGTACGCTCTCAAGAGACAGGGA 515 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| || ||||| Sbjct 516 CGTACCCTCTACGGTTTCGGCGGTTAA 542 >seq692 Length=2860329 Score = 95.1 bits (104), Expect = 2e-15 Identities = 181/267 (68%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| | ||| |||| |||||||| || ||||| ||||| || ||| Sbjct 2373532 GCCAAGCGTCACCGCAAAGTTCTCAGAGACAACATCCAGGGCATCACAAAGCCCGCAATC 2373473 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| | | || || ||||| || | || || || | || ||||||| Sbjct 2373472 CGCCGTCTGGCCAGAAGAGGCGGGGTCAAACGCATATCAGGTCTGATATACGAAGAGACC 2373413 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| | ||| | ||||| | | ||| || || || || || |||||| Sbjct 2373412 AGAGGCGTTCTCAAGGTGTTCCTTGAAAACGTCATTAGGGACGCCGTCACTTACACCGAG 2373353 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | || || || || ||||||| |||| || || | || | || || Sbjct 2373352 CACGCAAAGAGAAAAACCGTAACAGCCATGGACGTCGTGTACGCTCTCAAGAGACAGGGA 2373293 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| || ||||| Sbjct 2373292 CGTACCCTCTACGGTTTCGGCGGTTAA 2373266 Score = 95.1 bits (104), Expect = 2e-15 Identities = 181/267 (68%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| | ||| |||| |||||||| || ||||| ||||| || ||| Sbjct 2387080 GCCAAGCGTCACCGCAAAGTTCTCAGAGACAACATCCAGGGCATCACAAAGCCCGCAATC 2387021 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| | | || || ||||| || | || || || | || ||||||| Sbjct 2387020 CGCCGTCTGGCCAGAAGAGGCGGGGTCAAACGCATATCAGGTCTGATATACGAAGAGACC 2386961 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| | ||| | ||||| | | ||| || || || || || |||||| Sbjct 2386960 AGAGGCGTTCTCAAGGTGTTCCTTGAAAACGTCATTAGGGACGCCGTCACTTACACCGAG 2386901 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | || || || || ||||||| |||| || || | || | || || Sbjct 2386900 CACGCAAAGAGAAAAACCGTAACAGCCATGGACGTCGTGTACGCTCTCAAGAGACAGGGA 2386841 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| || ||||| Sbjct 2386840 CGTACCCTCTACGGTTTCGGCGGTTAA 2386814 Score = 91.5 bits (100), Expect = 2e-14 Identities = 176/260 (68%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| | ||| |||| |||||||| || ||||| ||||| || ||| Sbjct 2363469 GCCAAGCGTCACCGCAAAGTTCTCAGAGACAACATCCAGGGCATCACAAAGCCCGCAATC 2363410 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| | | || || ||||| || | || || || | || ||||||| Sbjct 2363409 CGCCGTCTGGCCAGAAGAGGCGGGGTCAAACGCATATCAGGTCTGATATACGAAGAGACC 2363350 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| | ||| | ||||| | | ||| || || || || || |||||| Sbjct 2363349 AGAGGCGTTCTCAAGGTGTTCCTTGAAAACGTCATTAGGGACGCCGTCACTTACACCGAG 2363290 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | || || || || ||||||| |||| || || | || | || || Sbjct 2363289 CACGCAAAGAGAAAAACCGTAACAGCCATGGACGTCGTGTACGCTCTCAAGAGACAGGGA 2363230 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | || ||||| || Sbjct 2363229 CGTACCCTCTACGGTTTCGG 2363210 >seq1372 Length=1726839 Score = 86.0 bits (94), Expect = 1e-12 Identities = 179/267 (67%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | ||| |||| |||||||| || || || || || || || Sbjct 1579527 GCCAAGCGTCATCGAAAAGTTCTCAGAGACAACATCCAGGGTATTACGAAACCTGCAATT 1579586 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| | || | | |||||||| || || | ||||| || | || || |||| Sbjct 1579587 CGCCGTATTGCCAGGAGAGGTGGAGTGAAACGCATTTCTGGTTTAATATACGAGGAGACA 1579646 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| | ||| ||||||| | | ||| || | || || || || || ||| Sbjct 1579647 AGAGGTGTACTTAAGGTCTTCCTAGAAAACGTCATTCGCGACGCCGTCACATACACTGAG 1579706 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | || || || || |||||||| |||| || || | || | || || Sbjct 1579707 CATGCCAAGAGAAAAACCGTGACGGCCATGGATGTCGTGTACGCCCTCAAGAGACAGGGA 1579766 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| || || |||||||| ||||| Sbjct 1579767 CGTGCCATCTACGGTTTTGGTGGTTAA 1579793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073379614763