Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helobdella_20robusta_20[refseq_20GCF_5F000326865.1_202012-12-20] 1,991 sequences; 235,376,169 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1829 107 2e-18 >seq1829 Length=5883334 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||||||||| ||||| | ||| || | | ||| | || ||||| ||||||||| Sbjct 4211088 TTAAAAATCTGCATCAGTTTTGAATTCACGTTTTGCTTCTGTTCCCATAACTCCCATTTT 4211147 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 || || || | |||||||||||| |||||||| || || ||||| || |||||| || Sbjct 4211148 CTGGTACTCTCCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTCTAAAGATATATGATC 4211207 Query 21247 CATAAAATCAAATGGATTTTCAGATTT 21273 ||| ||||||||||||||||| || || Sbjct 4211208 CATGAAATCAAATGGATTTTCTGACTT 4211234 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/165 (75%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 21463 TTTAAACATCAAACATGCAAAATCACAAT-GCAAACCTTCATCCCTACTTATTAATTCAT 21521 |||||| || ||||| ||| || ||| ||| |||| |||| ||||| || | |||| Sbjct 4218211 TTTAAATATTAAACA-GCAGCATATCAAGCGCATACCT-CATCTCTACTGATCAGCTCAT 4218268 Query 21522 TAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATG 21581 | || |||| ||||||||| | ||| | || || ||||||||||| || ||||| | Sbjct 4218269 TGCTGAACGTTAGACCGGGCATCACTCCACGTTTCTTCAACCAAAATATAGATGCAAAAG 4218328 Query 21582 CTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATC 21626 ||||||||| || || || || || || |||||||| || |||| Sbjct 4218329 ATCCTGAAAAAAAGATTCCTTCGACAGCTGCAAATGCCACCAATC 4218373 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 21866 TTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATAT 21925 ||||||||||| || |||||||| || ||||| || ||||| | || ||||| ||||| Sbjct 4220061 TTTTCATTTACAATCCCATCACTAGCAGCAAAGAAGGCCAAAACATGTTTTACAAAATGC 4220120 Query 21926 CGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCA 21985 || | || | || || |||||||| | || || || | ||| |||||||| Sbjct 4220121 TTCTCATCATTATTCAACTTGTTCCAATCCGCCATGTCCTTAGACATATCAACTTCTTCC 4220180 Query 21986 GTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATT 22045 || ||||| ||| || ||| | || || | ||||||| || | | | |||| Sbjct 4220181 GTCGTCCAGAAGGACGCTTCGGCCATCTTGTAAAACCTCCAGATGTCCTGGTGTTTTATC 4220240 Query 22046 GGAAATATTACAAACCT 22062 ||||| || |||||||| Sbjct 4220241 GGAAAAATAACAAACCT 4220257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531887562318840