Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helobdella_20robusta_20[refseq_20GCF_5F000326865.1_202012-12-20] 1,991 sequences; 235,376,169 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1829 113 6e-20 seq48 91.5 2e-13 >seq1829 Length=5883334 Score = 113 bits (124), Expect = 6e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 ||| ||||||||| || || || ||||| || ||||| || ||||| |||||||||| || Sbjct 4220056 CCAGATTTTCATTTACAATCCCATCACTAGCAGCAAAGAAGGCCAAAACATGTTTTACAA 4220115 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTT 33805 ||| || || || | | || |||||||| || || ||||| ||||| |||| Sbjct 4220116 AATGCTTCTCATCATTATTCAACTTGTTCCAATCCGCCATGTCCTTAGACATATCAACTT 4220175 Query 33806 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATT 33865 ||||| ||||| || || || || ||| | || || | |||||||||| | | || Sbjct 4220176 CTTCCGTCGTCCAGAAGGACGCTTCGGCCATCTTGTAAAACCTCCAGATGTCCTGGTGTT 4220235 Query 33866 GGATTGGGAAAATAACAAATCT 33887 || || ||||||||||| || Sbjct 4220236 TTATCGGAAAAATAACAAACCT 4220257 Score = 109 bits (120), Expect = 7e-19 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||||||||||||||| ||||| || || || | |||||| |||||||||||||| ||||| Sbjct 4211133 CATAACTCCCATTTTCTGGTACTCTCCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTC 4211192 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATT 33092 || ||||||| |||||||||||||| ||||| Sbjct 4211193 TAAAGATATATGATCCATGAAATCAAATGGATT 4211225 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/160 (75%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 33288 ATGTTTAAACATCAAACATGCGAA-ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTT 33346 || |||||| || ||||| | | ||| || ||| ||| || |||||||| || || | Sbjct 4218208 ATATTTAAATATTAAACAGCAGCATATCA-AGCGCATACC-TCATCTCTACTGATCAGCT 4218265 Query 33347 CGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGA 33406 | ||| ||||| || |||||||| | ||||| || || | ||||||||| || || | Sbjct 4218266 CATTGCTGAACGTTAGACCGGGCATCACTCCACGTTTCTTCAACCAAAATATAGATGCAA 4218325 Query 33407 ATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 | ||||| ||||| ||||||||||| || || ||||| || Sbjct 4218326 AAGATCCTGAAAAAAAGATTCCTTCGACAGCTGCAAATGC 4218365 >seq48 Length=5140933 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| ||| |||||||| |||||||| || || || | || ||||||||||| || | Sbjct 2581688 CACTGAATGACTTTTTTGTCTCCTTGTGAAGGTTGGACATTGCAATTCTGGCGGCAAGGA 2581629 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 ||||| || || |||| || ||| ||||| ||||| || ||||| |||||| Sbjct 2581628 GAGCATAGTCGGGGTGTTTTGCAGTGAGGGTGGCACAGATTTCTGCAGCCAGGTTGTCCA 2581569 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAG 64122 | || |||||||| || || ||| | ||| ||||| ||||||| Sbjct 2581568 ACTCAACCGTTGTGACACCCGGATACAATCCGCTTATAACTTTCATAG 2581521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622931696401560