Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helobdella_20robusta_20[refseq_20GCF_5F000326865.1_202012-12-20]
1,991 sequences; 235,376,169 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq1769 122 2e-22
seq780 89.7 9e-13
>seq1769
Length=991018
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | |||| | || ||||| | || | ||| || |||||| |||||
Sbjct 744128 ATGCCACCACGCAGTCTGAGAACCAAATGAAGTGTTGACTCCTTCTGAATATTGTAATCA 744069
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || | || ||||| || || ||||||||||| | ||| || || || |||
Sbjct 744068 CTCAATGTTCTACCATCCTCCAACTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCTGGT 744009
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||||||||| ||||| ||| ||||| || ||||| | |||
Sbjct 744008 GGAATACCTTCTTTATCTTGAATTTTTGCTTTGACATTGTCAATGGTATCACTTGGTTCA 743949
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| |||||||| ||||| ||||| |||||||||| || || |||||
Sbjct 743948 ACTTCCAGAGTAATTGTTTTGCCAGTCAATGTTTTAACAAAAATTTGCAT 743899
Score = 118 bits (130), Expect = 2e-21
Identities = 119/155 (77%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| ||||||||||| |||||||||||||| | ||||| || ||||| || ||||| |||
Sbjct 744281 TCTTCCAATTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTA 744222
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
||||| ||||| ||| ||||| |||||| || | |||||||| | |||||
Sbjct 744221 TCTTGGATTTTGGCTTTCACATTGTCTATAGTGTCACTTGGCTCTACTTCCAATGTAATT 744162
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||| | |||||| | ||| ||||||||
Sbjct 744161 GTCTTCCCAGTAAGTGTTTTGACGAAAATCTGCAT 744127
Score = 113 bits (124), Expect = 8e-20
Identities = 118/155 (76%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| || || ||||||||||||||||| | | ||||||||| ||||| || || ||||||
Sbjct 744509 TCTTCTAACTGTTTACCAGCAAAAATCAGACGCTGTTGGTCTGGTGGAATACCCTCTTTA 744450
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
||||| ||||| ||| |||||| ||| ||||| | ||| ||||| || || ||
Sbjct 744449 TCTTGAATTTTTGCTTTGACATTATCTATGGTATCACTGGGTTCAACTTCGAGTGTGATT 744390
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| ||||| || ||||| | || || |||||
Sbjct 744389 GTTTTGCCAGTCAAGGTTTTGACAAAAATTTGCAT 744355
Score = 95.1 bits (104), Expect = 2e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| || || ||||||||||||||||| || | || || ||||| || || |||||||||
Sbjct 745649 TCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATGCCTTCTTTA 745590
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
|| || ||||| || ||||| || || || | ||| |||||||| |||||
Sbjct 745589 TCCTGGATTTTTGCCTTCACATTGTCAATGGTGTCGCTTGGTTCAACTTCTAGTGTAATA 745530
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||| || ||||| | || ||||||||
Sbjct 745529 GTCTTCCCAGTCAAGGTTTTGACAAAAATCTGCAT 745495
Score = 91.5 bits (100), Expect = 3e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| || || ||||||||||||||||| || | || || || || || || ||||| |||
Sbjct 744965 TCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTA 744906
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
||||| || || || |||||| || || || | ||| ||||| || |||||
Sbjct 744905 TCTTGGATCTTGGCCTTGACATTATCAATGGTGTCACTGGGTTCAACTTCAAGTGTAATT 744846
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| ||||| || ||||| | || ||||||||
Sbjct 744845 GTTTTCCCAGTCAAAGTTTTGACAAAAATCTGCAT 744811
Score = 86.0 bits (94), Expect = 1e-11
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| ||||| || || ||||||||||| || | || || ||||| || || |||||||||
Sbjct 745193 TCTTCCAACTGCTTGCCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATGCCTTCTTTA 745134
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
|| || ||||| || ||||| ||||| || | ||| ||||| || |||||
Sbjct 745133 TCCTGGATTTTTGCCTTCACATTGTCGATAGTGTCGCTTGGTTCAACTTCGAGTGTAATA 745074
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || || || || ||||| | || ||||||||
Sbjct 745073 GTCTTCCCTGTCAAGGTTTTGACAAAAATCTGCAT 745039
Score = 86.0 bits (94), Expect = 1e-11
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| || || || || ||||||||||| | | || || ||||| || || |||||||||
Sbjct 745421 TCTTCTAACTGCTTGCCAGCAAAAATCAGACGTTGCTGATCAGGAGGAATGCCTTCTTTA 745362
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
|| || ||||| || ||||| ||||| || | ||| |||||||| |||||
Sbjct 745361 TCCTGGATTTTTGCCTTCACATTGTCGATAGTGTCGCTTGGTTCAACTTCTAGTGTAATA 745302
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||| || ||||| | || ||||||||
Sbjct 745301 GTCTTCCCAGTCAAGGTTTTGACAAAAATCTGCAT 745267
>seq780
Length=2529187
Score = 89.7 bits (98), Expect = 9e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025
|||||||| ||||| |||||| || ||||| || ||||||||| |||||| ||
Sbjct 180138 CCTTCTTTGTCTTGAATTTTAGACTTGACATTTTCAATGCTATCTGACGGTTCTACCTCG 180079
Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| |||||||||||||| || || ||||| | ||| ||||||||
Sbjct 180078 AGGGTAATGGTTTTACCCGTCAACGTTTTCACGAAGATCTGCAT 180035
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905113473427800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |