Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helobdella_20robusta_20[refseq_20GCF_5F000326865.1_202012-12-20] 1,991 sequences; 235,376,169 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1829 131 2e-25 >seq1829 Length=5883334 Score = 131 bits (144), Expect = 2e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||| ||||||||| || || ||||||||||| ||||| || ||||| |||||||| | || Sbjct 4220056 CCAGATTTTCATTTACAATCCCATCACTAGCAGCAAAGAAGGCCAAAACATGTTTTACAA 4220115 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118 ||| || ||||| |||| || ||||| || || || || || ||||| |||| Sbjct 4220116 AATGCTTCTCATCATTATTCAACTTGTTCCAATCCGCCATGTCCTTAGACATATCAACTT 4220175 Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178 |||| | ||||| || ||||| || ||| | ||||| | |||| || || | | || Sbjct 4220176 CTTCCGTCGTCCAGAAGGACGCTTCGGCCATCTTGTAAAACCTCCAGATGTCCTGGTGTT 4220235 Query 40179 GTATTGGAAAAATAACAAATCT 40200 ||| |||||||||||||| || Sbjct 4220236 TTATCGGAAAAATAACAAACCT 4220257 Score = 109 bits (120), Expect = 8e-19 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||||||||||||||| ||||| || ||||| | ||| || |||||||||||||| ||||| Sbjct 4211133 CATAACTCCCATTTTCTGGTACTCTCCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTC 4211192 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATT 39405 || ||||||| |||||||||||||| ||||| Sbjct 4211193 TAAAGATATATGATCCATGAAATCAAATGGATT 4211225 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | || || || || || || ||||| | ||||| || | Sbjct 4218245 CCTCATCTCTACTGATCAGCTCATTGCTGAACGTTAGACCGGGCATCACTCCACGTTTCT 4218304 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||||||||| | ||||||||||| ||||| ||||| ||||| || |||||||||| Sbjct 4218305 TCAACCAAAATATAGATGCAAAAGATCCTGAAAAAAAGATTCCTTCGACAGCTGCAAATG 4218364 Query 39759 CAACAAGTCT 39768 | || | ||| Sbjct 4218365 CCACCAATCT 4218374 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 39866 TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATG 39925 |||||||| ||| | | ||||| ||||| | ||||| |||||||||||||| ||| Sbjct 4219776 TTTTCATCTGAATCCTGTATGTATGTTTCTATGAGGAGACTGTACATTTCTGAATGAATG 4219835 Query 39926 TTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 |||||||| || ||||| || || || ||| | | ||||| | || ||| ||||| Sbjct 4219836 TTTTCAATAGCTATCTGGAAGCCATAGAAAAAGCGGGCTTCGGGAAGTTGCACCTC 4219891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686891704557240