Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helobdella_20robusta_20[refseq_20GCF_5F000326865.1_202012-12-20] 1,991 sequences; 235,376,169 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1829 95.1 1e-14 >seq1829 Length=5883334 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||||| ||| ||||| || || ||||||||||| ||||| | ||||||||| Sbjct 4218368 GTGGCATTTGCAGCTGTCGAAGGAATCTTTTTTTCAGGATCTTTTGCATCTATATTTTGG 4218309 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 || |||||||| || ||||||| || | ||||| |||||| | || ||| | ||| Sbjct 4218308 TTGAAGAAACGTGGAGTGATGCCCGGTCTAACGTTCAGCAATGAGCTGATCAGTAGAGAT 4218249 Query 44255 GA 44256 || Sbjct 4218248 GA 4218247 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 |||||||| | ||||| || || | || ||||| ||| | ||||| | || | Sbjct 4220257 AGGTTTGTTATTTTTCCGATAAAACACCAGGACATCTGGAGGTTTTACAAGATGGCCGAA 4220198 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA 43816 ||||| || ||||| | |||||||||||| || |||| ||| | || |||||| Sbjct 4220197 GCGTCCTTCTGGACGACGGAAGAAGTTGATATGTCTAAGGACATGGCGGATTGGAACAAG 4220138 Query 43817 TTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGAC 43876 || || | || || |||||| || |||||||| || |||||||| || || Sbjct 4220137 TTGAATAATGATGAGAAGCATTTTGTAAAACATGTTTTGGCCTTCTTTGCTGCTAGTGAT 4220078 Query 43877 GGGATAGTCAATGAAAATTTGGTTAGT 43903 ||||| || ||||||||| |||||||| Sbjct 4220077 GGGATTGTAAATGAAAATCTGGTTAGT 4220051 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||| ||||| |||| || || ||||| ||||| || |||||||||| Sbjct 4211227 AAAATCCATTTGATTTCATGGATCATATATCTTTAGAAGGTAAAACTAATTTTTTTGAAA 4211168 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAAC--AAGTGACA-ATAAATTTA 44609 || | |||||||| || ||| |||||| || ||| ||| ||| | | | |||| | Sbjct 4211167 AAAGAGTTGGAGAGTACCAGAAAATGGGAGTTATGGGAACAGAAGCAAAACGTGAATTCA 4211108 Query 44610 CTACGGATGAAGATTTCTAA 44629 || |||| |||||| ||| Sbjct 4211107 AAACTGATGCAGATTTTTAA 4211088 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 43912 GCAAGAAGTT-CAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAA 43970 ||||| || | ||| | || ||||| || | ||| ||||| || || || || || |||| Sbjct 4219896 GCAAGGAGGTGCAACTTCCCGAAGCCCGCTTTTTCTATGGCTTCCAGATAGCTATTGAAA 4219837 Query 43971 ATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACAT 44013 | |||||||| |||||||||||||| || ||||| || ||||| Sbjct 4219836 ACATTCATTCAGAAATGTACAGTCTCCTCATAGAAACATACAT 4219794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446355605955