Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helobdella_20robusta_20[refseq_20GCF_5F000326865.1_202012-12-20] 1,991 sequences; 235,376,169 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1769 89.7 4e-13 >seq1769 Length=991018 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGA---AAGC 27846 ||||| ||||| || ||||| ||||||||||| |||||| | || || || ||| Sbjct 744127 ATGCAGATTTTCGTCAAAACACTTACTGGGAAGACAATTACATTGGAAGTAGAGCCAAGT 744186 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || ||||| || ||| ||||| || || |||||| |||| || Sbjct 744187 GAC-ACTATAGACAAT--GTGAAAGCCAAAATCCAAGATAAGGAAGGTATTCCACCAGAT 744243 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| ||||||||||| || ||||||||||| || | | | | | || ||| Sbjct 744244 CAACAACGTTTAATTTTTGCTGGCAAACAATTGGAAGATGGCAGAACCCTCAGTGACTAC 744303 Query 27967 AACATCCAAAAAGA--GAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || | ||||| || |||||| | | |||||||| || Sbjct 744304 AACATCCAAAAGGAATCAACACTT--CACTTGGTTCTCAGGTTGCGTGGTGG 744353 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| ||||| | |||||||| ||||||| | || || ||| | | Sbjct 745495 ATGCAGATTTTTGTCAAAACCTTGACTGGGAAGACTATTACACTAGAAGTTGAACCAAGC 745554 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || |||||| || |||||||| |||| || | Sbjct 745555 GACACCATTGACAAT--GTGAAGGCAAAAATCCAGGATAAAGAAGGCATTCCTCCTGATC 745612 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || |||||||| || ||||| || || || | | | | ||||||| Sbjct 745613 AGCAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGTAGAACACTCAGTGATTACA 745672 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| || | || |||||| | | |||||||| || Sbjct 745673 ACATCCAAAAAGAATCAACCCTTCACTTGGTTCTCAGATTGCGTGGTGG 745721 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| | ||||| ||| ||||| | || || ||| | Sbjct 743899 ATGCAAATTTTTGTTAAAACATTGACTGGCAAAACAATTACTCTGGAAGTTGAACCAAGT 743958 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| |||||| |||||| || ||||||||| |||| || | Sbjct 743959 GATACCATTGACAAT--GTCAAAGCAAAAATTCAAGATAAAGAAGGTATTCCACCAGATC 744016 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | | |||||||| || || || ||||| || | | | ||| ||||||| Sbjct 744017 AGCAAAGACTGATTTTTGCTGGCAAGCAGTTGGAGGATGGTAGAACATTGAGTGATTACA 744076 Query 27968 ACATCCAAAAAGAG--AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | || || || ||| | ||||| ||||||||| | | ||||||| ||| Sbjct 744077 ATATTCAGAAGGAGTCAACACTT--CATTTGGTTCTCAGACTGCGTGGTGGC 744126 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| |||||| | ||||||||| |||||| |||| || ||| || Sbjct 744811 ATGCAGATTTTTGTCAAAACTTTGACTGGGAAAACAATTACACTTGAAGTTGAACCCAGT 744870 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| || || || || |||||| |||| || | Sbjct 744871 GACACCATTGATAAT--GTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCTCCAGATC 744928 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || |||||||| || ||||| || || || | | | | ||||||| Sbjct 744929 AGCAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGTAGAACACTCAGTGATTACA 744988 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| || | || |||||| | | |||||||| || Sbjct 744989 ACATCCAGAAAGAATCAACCCTTCACTTGGTTCTCAGATTGCGTGGTGG 745037 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| ||||| | || ||||| ||||||| | || || ||| | | Sbjct 745039 ATGCAGATTTTTGTCAAAACCTTGACAGGGAAGACTATTACACTCGAAGTTGAACCAAGC 745098 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || || |||||| || |||||||| |||| || | Sbjct 745099 GACACTATCGACAAT--GTGAAGGCAAAAATCCAGGATAAAGAAGGCATTCCTCCTGATC 745156 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || |||||||| || || || ||||| || | | | | | ||||||| Sbjct 745157 AGCAACGTTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGTAGAACCCTCAGTGATTACA 745216 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || || | || |||||| | | |||||||| || Sbjct 745217 ACATCCAAAAGGAATCAACCCTTCACTTGGTTCTCAGATTGCGTGGTGG 745265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355853764887657