Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helobdella_20robusta_20[refseq_20GCF_5F000326865.1_202012-12-20] 1,991 sequences; 235,376,169 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1769 147 5e-30 seq514 87.8 4e-12 seq1135 84.2 5e-11 >seq1769 Length=991018 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || ||||| | ||||||||| ||||| ||||| || |||| |||||||| | ||| Sbjct 745943 CGCAGTCTTAAGACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCACTGAGGGTT 745884 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| | |||||| ||||| || || || || ||||| || || ||||||||| Sbjct 745883 CTGCCATCTTCCAACTGCTTGCCAGCAAAAATCAGACGCTGTTGATCTGGTGGAATACCT 745824 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| ||||| || ||||||| || |||||||| || ||| || || || Sbjct 745823 TCTTTGTCCTGGATTTTCGCCTTCACATTGTCAATGGTGTCACTGGGTTCAACTTCCAAA 745764 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 |||||||| || || ||||| || || Sbjct 745763 GTGATCGTTTTTCCAGTCAAGGTCTT 745738 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| | ||| || || | ||| || || |||||||| |||| |||||||| | || Sbjct 745032 ACGCAATCTGAGAACCAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCACTGAGTGT 744973 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||||| ||| || ||||| || || | ||||| || || || |||||||| Sbjct 744972 TCTACCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGAGGAATACC 744913 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||||||||| ||| ||| || |||||||| || ||| || || | Sbjct 744912 TTCCTTATCTTGGATCTTGGCCTTGACATTATCAATGGTGTCACTGGGTTCAACTTCAAG 744853 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || || || || ||||||||||| Sbjct 744852 TGTAATTGTTTTCCCAGTCAAAGTTTT 744826 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| | ||| || || | || || || ||||| ||||||| |||||||| | || Sbjct 743892 ACGTAATCTGAGAACCAAATGAAGTGTTGATTCCTTTTGGATGTTGTAATCACTAAGGGT 743833 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||| |||| ||| || ||||| || || | |||||||| || || |||||||| Sbjct 743832 TCTGCCATCCTCTAACTGTTTGCCAGCAAAAATCAAGCGTTGTTGATCTGGAGGAATACC 743773 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||||||||| ||| ||| || || ||||| || || || || | Sbjct 743772 TTCCTTATCTTGGATCTTGGCCTTGACATTGTCAATAGTGTCACTGGGCTCAACTTCCAG 743713 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || ||||| ||||||| ||| | |||||| Sbjct 743712 TGTTATTGTTTTTCCGGTCAAGGTTTTTACGAAAATTTGCAT 743671 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| | ||| || || | ||| || || ||||||||||||| |||||||| | || Sbjct 745716 ACGCAATCTGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTGTAATCACTGAGTGT 745657 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||||| ||| || ||||| || || | ||||| || || || ||||| || Sbjct 745656 TCTACCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATGCC 745597 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || || ||||| ||| ||||||| || |||||||| | ||| || |||| Sbjct 745596 TTCTTTATCCTGGATTTTTGCCTTCACATTGTCAATGGTGTCGCTTGGTTCAACTTCTAG 745537 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || ||||| || ||||| ||||| Sbjct 745536 TGTAATAGTCTTCCCAGTCAAGGTTTT 745510 Score = 116 bits (128), Expect = 9e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||| || || | || || || || || || || | ||||||||| ||| || Sbjct 744120 ACGCAGTCTGAGAACCAAATGAAGTGTTGACTCCTTCTGAATATTGTAATCACTCAATGT 744061 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||| || | |||||| ||||| || || |||| ||| || || || |||||||| Sbjct 744060 TCTACCATCCTCCAACTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCTGGTGGAATACC 744001 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| || ||||| || |||||| || ||| || ||||| || | ||| || || | Sbjct 744000 TTCTTTATCTTGAAT-TTTTGCTTTGACATTGTCAATGGTATCACTTGGTTCAACTTCCA 743942 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || ||||| ||||| ||||| | || | |||||| Sbjct 743941 GAGTAATTGTTTTGCCAGTCAATGTTTTAACAAAAATTTGCAT 743899 Score = 104 bits (114), Expect = 6e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 || || || | ||| || || ||||| ||||||| ||||| || | ||||| ||| Sbjct 744341 CTGAGAACCAAGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCACTGAGGGTTCTGCCA 744282 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 ||||| | || || ||||| || || | |||||||| || || |||||||||||||| Sbjct 744281 TCTTCCAATTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTA 744222 Query 225619 TCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||| ||| || |||||| || || ||||| | || || || || || || Sbjct 744221 TCTTGGAT-TTTGGCTTTCACATTGTCTATAGTGTCACTTGGCTCTACTTCCAATGTAAT 744163 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | ||||| | ||| | ||||| Sbjct 744162 TGTCTTCCCAGTAAGTGTTTTGACGAAAATCTGCAT 744127 >seq514 Length=9866887 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || || |||||||| || ||||| ||||| |||||||| || ||||| || ||||| Sbjct 8547157 GAAGATCTGCCCATCAGTGATGGAGATGACATTGGTAGGGATGTAGGCAGATACGTCACC 8547216 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577 || || || |||| || || | ||| || || ||||||||||| || Sbjct 8547217 GGCCTGGGTCTCGATGACGGGCAGGGCAGTAAGGGATCCACCACCGAA 8547264 >seq1135 Length=2081522 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/98 (80%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||| ||||| ||||||||||||||||| | ||||| ||||| || Sbjct 1800076 TTCTGGATGCCCAAAGAATCAAAATAAATGTTGATAAAGTACTGGATCACCTCCACCAAC 1800135 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTA 370769 || ||||||| |||| |||| ||||| | ||| |||| Sbjct 1800136 AGGGTCAAAAATGCTA-TATTTAAATTACGATCTGTTA 1800172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192500778901754