Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helobdella_20robusta_20[refseq_20GCF_5F000326865.1_202012-12-20]
1,991 sequences; 235,376,169 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1829 102 1e-16
>seq1829
Length=5883334
Score = 102 bits (112), Expect = 1e-16
Identities = 121/160 (76%), Gaps = 3/160 (2%)
Strand=Plus/Plus
Query 48125 ATGTTTAAACATTAAACATGCAAAATCACAAT-GAAGACCTTCATCTCTACTAATTAATT 48183
|| |||||| |||||||| ||| || ||| | | |||| |||||||||| || | |
Sbjct 4218208 ATATTTAAATATTAAACA-GCAGCATATCAAGCGCATACCT-CATCTCTACTGATCAGCT 4218265
Query 48184 CGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGA 48243
| || || || ||||||||||| | ||||||||| || | ||||||||| | || |
Sbjct 4218266 CATTGCTGAACGTTAGACCGGGCATCACTCCACGTTTCTTCAACCAAAATATAGATGCAA 4218325
Query 48244 AAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||||| ||||| || || ||||| || || ||||||||
Sbjct 4218326 AAGATCCTGAAAAAAAGATTCCTTCGACAGCTGCAAATGC 4218365
Score = 100 bits (110), Expect = 4e-16
Identities = 78/93 (84%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896
||||||||||||||| || || || || || | ||| || |||||||||||||| |||||
Sbjct 4211133 CATAACTCCCATTTTCTGGTACTCTCCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTC 4211192
Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATT 47929
|| ||||||| ||||| ||||||||||||||
Sbjct 4211193 TAAAGATATATGATCCATGAAATCAAATGGATT 4211225
Score = 98.7 bits (108), Expect = 1e-15
Identities = 143/202 (71%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582
||| ||| |||||||| || ||||||||||||||||| || || || |||||||| | ||
Sbjct 4220056 CCAGATTTTCATTTACAATCCCATCACTAGCAGCAAAGAAGGCCAAAACATGTTTTACAA 4220115
Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642
||| || || | | ||| || ||||| || || || || || ||||| ||||
Sbjct 4220116 AATGCTTCTCATCATTATTCAACTTGTTCCAATCCGCCATGTCCTTAGACATATCAACTT 4220175
Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702
|||| | ||||| || || || || || | || || | |||| || || || ||
Sbjct 4220176 CTTCCGTCGTCCAGAAGGACGCTTCGGCCATCTTGTAAAACCTCCAGATGTCCTGGTGTT 4220235
Query 48703 GGATTGGGAAAATAACAAATCT 48724
|| || ||||||||||| ||
Sbjct 4220236 TTATCGGAAAAATAACAAACCT 4220257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694651511430240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |