Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helobdella_20robusta_20[refseq_20GCF_5F000326865.1_202012-12-20] 1,991 sequences; 235,376,169 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1829 129 8e-25 >seq1829 Length=5883334 Score = 129 bits (142), Expect = 8e-25 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 || ||| ||||| || || ||||||||||||||||| || ||||| |||||||| | ||| Sbjct 4220057 CAGATTTTCATTTACAATCCCATCACTAGCAGCAAAGAAGGCCAAAACATGTTTTACAAA 4220116 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132 || || ||||| || ||| || ||||| || || || || || ||||| ||||| Sbjct 4220117 ATGCTTCTCATCATTATTCAACTTGTTCCAATCCGCCATGTCCTTAGACATATCAACTTC 4220176 Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTG 47192 ||| | |||||||| ||||| || || | || || | |||| || || | | || Sbjct 4220177 TTCCGTCGTCCAGAAGGACGCTTCGGCCATCTTGTAAAACCTCCAGATGTCCTGGTGTTT 4220236 Query 47193 GATCGGAAAAATAACAAATCT 47213 ||||||||||||||||| || Sbjct 4220237 TATCGGAAAAATAACAAACCT 4220257 Score = 100 bits (110), Expect = 4e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 ||||||||||||||| ||||| || || || | ||| || |||||||||||||| ||||| Sbjct 4211133 CATAACTCCCATTTTCTGGTACTCTCCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTC 4211192 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATT 46418 || ||||||| ||||| |||||||| ||||| Sbjct 4211193 TAAAGATATATGATCCATGAAATCAAATGGATT 4211225 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/169 (73%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 46614 ATGTTTAAACATTAAACATGCAAAATCACAAT-GAAGGCCTTCATCTCTACTAATTAATT 46672 || |||||| |||||||| ||| || ||| | | ||| |||||||||| || | | Sbjct 4218208 ATATTTAAATATTAAACA-GCAGCATATCAAGCGCATACCT-CATCTCTACTGATCAGCT 4218265 Query 46673 CGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGA 46732 | || || || || || ||||| | |||||| || || | ||||||||||| || | Sbjct 4218266 CATTGCTGAACGTTAGACCGGGCATCACTCCACGTTTCTTCAACCAAAATATAGATGCAA 4218325 Query 46733 AAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCT 46781 ||||||| ||||| || || ||||| ||||| || ||||| || | ||| Sbjct 4218326 AAGATCCTGAAAAAAAGATTCCTTCGACAGCTGCAAATGCCACCAATCT 4218374 Score = 87.8 bits (96), Expect = 3e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46879 TTTTCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938 |||||||| ||| | | ||||| ||||| | ||||| |||||||||||||||||| Sbjct 4219776 TTTTCATCTGAATCCTGTATGTATGTTTCTATGAGGAGACTGTACATTTCTGAATGAATG 4219835 Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC 46994 ||||||||||| ||||| || || || ||| | | ||||| | || || ||||| Sbjct 4219836 TTTTCAATAGCTATCTGGAAGCCATAGAAAAAGCGGGCTTCGGGAAGTTGCACCTC 4219891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712916656845120