Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2421 147 3e-30 seq4963 132 6e-26 >seq2421 Length=99546 Score = 147 bits (162), Expect = 3e-30 Identities = 213/294 (72%), Gaps = 9/294 (3%) Strand=Plus/Minus Query 24213 TTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCA 24272 ||||||||||||||||| | ||||| ||||| ||||| ||||||||||| ||||| ||| Sbjct 31724 TTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCAGCA 31665 Query 24273 AAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT-GT--ATCCACTTTTGAGCCCAA 24329 || |||| || | ||| || || | || | || ||||| ||| | |||||| Sbjct 31664 AATGCAACAACACGTTCAGAGAAAGAAGCACAATCTTTGTTAATCCATTTTAGTGCCCAA 31605 Query 24330 TCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCA 24389 | || || |||| ||||| ||||| || || || |||||||| | || ||||| Sbjct 31604 ACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAAATAAATTTGACTTTTCT 31545 Query 24390 TTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTT 24447 | |||||||| |||||||| | ||||| ||||||||| || || ||||||| Sbjct 31544 ATCGGATCTTTAATGAGAGTATCAATGAGTAAAGA--ATACATTTCTGAGTGGATGTTTT 31487 Query 24448 CAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGTACTTCT 24500 |||| || |||||||| || || || ||| || || |||| | || |||||| Sbjct 31486 CAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTCTGGTAGT-TGAACTTCT 31434 Score = 111 bits (122), Expect = 2e-19 Identities = 173/244 (71%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 23961 ATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCA---TTTCACAATTCATTCCT 24017 || |||||||| || ||| || |||||||||||||| | ||| | ||||||||| Sbjct 32375 ATTAATCTATCAGCACAAAATTCAATATATGTTTTCATAAGACTTTTA---TTCATTCCT 32319 Query 24018 ATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTT 24077 | ||| | | || | || | |||| | ||| || |||||||| || || ||| Sbjct 32318 AAAAGATCACAGGGTAAAGACTCAGTCAAAAACTCAATTTCAATAGCTACAGCATCTCGA 32259 Query 24078 ATAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAAC 24135 ||||| | ||||| ||||||| || || |||||| ||||||| |||| | || Sbjct 32258 ATAATTTGTTTTACTCGTTCTTCAGAAGGCTTGTTTACAAT--ATGTTTATACATAAGAC 32201 Query 24136 ATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 24195 |||| || || || |||| |||||| |||||||| || ||||| || || || || | || Sbjct 32200 ATGCAAAGTCACAATGTAAACCCTCATCTCTACTGATCAATTCATTTGAGAAAGTTACTC 32141 Query 24196 CGGG 24199 | || Sbjct 32140 CAGG 32137 Score = 104 bits (114), Expect = 3e-17 Identities = 151/211 (72%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 24522 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 24581 |||||||| || ||||| || || || ||||| || || | ||||| |||||||| Sbjct 31317 TTTTCATTAACAATTCCATCGCTAGCAGCAAAGAATGCAAGAACATGAGAGATAAAATAC 31258 Query 24582 TTTTCGTCTGGTGTTAG--TTTATTCC-AATCATTGATATCTTTAGATATATCCACTTCT 24638 ||||| | || | || ||| |||| ||| | ||| || | ||| |||||| Sbjct 31257 TTTTCCTGAGGCTTCAGCTTTTCTTCCCAATGAACTGCATCAGCAGCCAAATCAACTTCT 31198 Query 24639 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 24698 || ||||||||||| || || || || | || ||||| ||||| || || | ||||||| Sbjct 31197 TCAACTGTCCAAAACGAGGCTTCAGCTTGCTTGTACATTTTCCATATATCTTTATATTGA 31138 Query 24699 ATTGGAAAAATAACAAATCTATTTGGATTTT 24729 |||||||| | |||||| || ||||||| Sbjct 31137 ATTGGAAATAAAACAAACCTTCGGGGATTTT 31107 >seq4963 Length=54722 Score = 132 bits (146), Expect = 6e-26 Identities = 220/315 (70%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 ||||| || || || ||| ||| || || | ||||||| |||| | |||||| | || Sbjct 22410 AGACCAATGCCACCAGCCCATTTTGAAATAATTGCGCATTGTTTAACAGTATCAAAAATT 22469 Query 54365 CCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 54423 || || ||||||||| | ||| | ||| || ||||||||| ||||| || | | Sbjct 22470 CCTTCAATACTATCACTCTGCATAGCTAA-TAAAAAACAGCTTGACATCTGAGGTCTGGG 22528 Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 || || | ||| ||||| |||||||| || || |||||||||||||| || | || ||| Sbjct 22529 GGTGCCAGAATTGAATAATGTAGGAGAGGCATGAGTAAACCATTTTTCTGACATTAAATT 22588 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || || ||||| | || | ||| ||| || || || | || | ||| || Sbjct 22589 ATATGTTTCTATAGCAGCATCAAGATCTTCACCATGTATACCAACAGATACTCTCATCAA 22648 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||| ||||| || ||| | | || || ||||| ||||| || ||| |||| | Sbjct 22649 CATGTGTTGAGGCCTCTCAGCAGTTTTACCATTAATTTTTAGCAAATAAGATCTTTCAAG 22708 Query 54604 AGTTTTAAAACCAAA 54618 ||| | || | |||| Sbjct 22709 AGTCTAAATATCAAA 22723 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| || | ||| | |||||| || || || | | || | | | ||| |||| Sbjct 15725 TTCTTCATGTTATCGTCCCATAAGTTAAGATCAGTAAGATCTTTCATTAAATGTTTATTA 15784 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || ||||||||||||||||| | ||||| | || |||||||| | || || ||||| Sbjct 15785 ACAACTTGAAATTCTCCAGAAAGCACTCTTCTAGAATAAATATTGTTAGTGTATGGTTCA 15844 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | || ||||| || || | ||||||||| || || || || |||||||| || || ||| Sbjct 15845 ATTGATTCATTGTTGCCAAGAATTTGAGCTGTAGAGGCTGTTGGCATAGGAGCAACTAAT 15904 Query 53267 AAACTATTTCTAAGACC 53283 ||||| |||| || ||| Sbjct 15905 AAACTGTTTCGAACACC 15921 Score = 113 bits (124), Expect = 5e-20 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 54086 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 54145 || ||||| || || ||||| ||||| | || | || | |||||||||| |||||| Sbjct 22086 TGCTCCTCTTTACCAGTATTTTTTTTTAAGTCTAAAAAGTCTATAATATCAGCATGCCAA 22145 Query 54146 GGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 54205 || || ||||| |||| || || || || ||||| ||||||||||| | ||||| Sbjct 22146 GGCTCTAAGTAGATGGCAATTGAGCCTGGTCGCTTGTTACCTCCCTGATCAACATATCTT 22205 Query 54206 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTC 54262 || || |||||| | ||||| ||||| ||||| || ||||| || |||||| ||| Sbjct 22206 GCAGTATTATTAAATACTCTTAACATGGGAATTATTCCATTCGAATGACCATTTGTC 22262 Score = 82.4 bits (90), Expect = 9e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 53534 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC-AGCTTCTGG 53592 ||| | |||||||||||||| ||||||||||| ||| | || || ||||| ||| || || Sbjct 20219 AATACCTGAACACCAATACCTATAGGTCTATGCCTCATGTTTGA-ATTTCGAGCCTCAGG 20277 Query 53593 AATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCAC 53652 || || ||| | || |||||||| ||||| || ||||| || |||||| || Sbjct 20278 AACTGGGTAAAAGTTTCGATCTATAACCTTATTTAGATTTCTTGTTATCACTTTGGTGAC 20337 Query 53653 ATCCTTCAGTTTGAGAAAATCA 53674 || ||| | ||| ||||||| Sbjct 20338 ATACTTTAATTTCTTAAAATCA 20359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593566371487680