Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq266 104 2e-17 >seq266 Length=263831 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||| |||||||||||||| || ||||||| | | || || | |||||| || Sbjct 46726 GTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCA 46785 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| | | || || || || | ||||| ||||| ||| || |||| Sbjct 46786 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTC 46845 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | ||||||| | || || |||| |||||||| ||||| ||||| ||| Sbjct 46846 ACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTT 46905 Query 21159 TTGACAAATATTTGCAT 21175 || |||||||||||||| Sbjct 46906 TTAACAAATATTTGCAT 46922 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||| |||||||||||||| || ||||||| | | || || | |||||| || Sbjct 46954 GTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCA 47013 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| | | || || || || | ||||| ||||| ||| || |||| Sbjct 47014 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTC 47073 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | ||||||| | || || |||| |||||||| ||||| ||||| ||| Sbjct 47074 ACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTT 47133 Query 21159 TTGACAAATATTTGCAT 21175 || |||||||||||||| Sbjct 47134 TTAACAAATATTTGCAT 47150 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 |||||||| | | || || | ||| | ||| ||||| |||||||||||||| || Sbjct 46239 TCCCCCTCTTAATCGAAGAACTAGATGGAGAGTAGACTCTTTTTGAATGTTATAATCACT 46298 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 ||| ||| | | || || | |||||| || ||| |||| | | || || || || Sbjct 46299 CAGTGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 46358 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||| ||||| ||| || |||||| | | | | ||||||| | || || Sbjct 46359 GATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGAC 46418 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||| ||||| ||||| ||||| |||||||||||||| Sbjct 46419 CTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46466 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||| |||||||||||||| || ||||||| | | || || | |||||| || Sbjct 46498 GTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCA 46557 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| | | || || || || | ||||| ||||| ||| || |||| Sbjct 46558 GCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCTTTC 46617 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | ||||||| | || || |||| || ||||| ||||| ||||| ||| Sbjct 46618 ACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTTGCCAGTTAAAGTT 46677 Query 21159 TTGACAAATATTTGCAT 21175 || || ||||||||||| Sbjct 46678 TTAACGAATATTTGCAT 46694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422151560323856