Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq266 104 2e-17 seq24 89.7 4e-13 >seq266 Length=263831 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||||||| | ||||| || || ||||||||||| || || ||||| || Sbjct 46694 ATGCAAATATTCGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCT 46635 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | || ||||| || ||||||||| | || ||||||| Sbjct 46634 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 46575 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | || ||||| || ||||| || |||||| || ||| || |||||| || Sbjct 46574 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAAC 46515 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| || || || |||||| | || | ||||| |||| || Sbjct 46514 ATTCAAAAAGAGTCAACCCTTCACCTTGTTCTTCGATTGAGAGGTGG 46468 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||||||||| | ||||| || || |||||||||||||| || ||||| || Sbjct 46922 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCT 46863 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | || ||||| || ||||||||| | || ||||||| Sbjct 46862 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 46803 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | || ||||| || ||||| || |||||| || ||| || |||||| || Sbjct 46802 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAAC 46743 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| || || || |||||| | || | ||||| |||| || Sbjct 46742 ATTCAAAAAGAGTCAACCCTTCACCTTGTTCTTCGATTGAGAGGTGG 46696 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||||||||| | ||||| || || |||||||||||||| || ||||| || Sbjct 47150 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCT 47091 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | || ||||| || ||||||||| | || ||||||| Sbjct 47090 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 47031 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | || ||||| || ||||| || |||||| || ||| || |||||| || Sbjct 47030 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAAC 46971 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| || || || |||||| | || | ||||| |||| || Sbjct 46970 ATTCAAAAAGAGTCAACCCTTCACCTTGTTCTTCGATTGAGAGGTGG 46924 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||||||||| | ||||| || || ||||||||||| || || ||||| || Sbjct 46466 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCT 46407 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | || ||||| || ||||||||| | || ||||||| Sbjct 46406 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 46347 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | || ||||| || ||||| || |||||| || ||| || ||||| || Sbjct 46346 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACACTGAGTGATTATAAC 46287 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGTA 25264 |||||||| || |||||||| || | || | |||||| |||| || || Sbjct 46286 ATTCAAAAAGAGTCTACTCTCCATCTAGTTCTTCGATTAAGAGGGGGATA 46237 >seq24 Length=448628 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||||||||| | ||||| | || || |||||||| || || ||||| || Sbjct 62159 ATGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACGTTAGAGGTTGAACCTGCT 62218 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | | || |||||| || ||||||||| | || ||||||| Sbjct 62219 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 62278 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | | || ||||| || || ||||| |||||| | ||| | || |||||| Sbjct 62279 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGACTACAAT 62338 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| || ||||| | || | |||||| ||||||| Sbjct 62339 ATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGAGGAGG 62385 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||||||||| | ||||| | || || |||||||| || || ||||| || Sbjct 62387 ATGCAAATATTTGTAAAAACCCTTACTGGTAAAACCATCACTTTAGAGGTTGAACCTGCT 62446 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | | || |||||| || ||||||||| | || ||||||| Sbjct 62447 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 62506 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | | || ||||| || || ||||| |||||| | ||| | || |||||| Sbjct 62507 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGACTACAAT 62566 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| || ||||| | || | |||||| ||||||| Sbjct 62567 ATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGAGGAGG 62613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410692082247224