Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq24 98.7 9e-16 seq266 96.9 3e-15 >seq24 Length=448628 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| ||||||||||||||||| || || | ||| | | |||||| | || || ||| Sbjct 62811 GTAGATTCTTTTTGAATGTTGTAGTCACTGAGAGTTCTCCCATCCTCTAATTGCTTACCA 62752 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | ||||||||| || || || || || ||||||||| |||||| ||| Sbjct 62751 GCAAAAATTAAACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAATTTTAGCTTTT 62692 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || || | || ||||| | || | ||||| || || || ||| Sbjct 62691 ACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTTTTACCAGTAAGGGTT 62632 Query 118722 TTTACAAAAATCTGCAT 118738 |||||||| || ||||| Sbjct 62631 TTTACAAATATTTGCAT 62615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCG 118568 ||||||| | ||||| || | |||| || | || || |||||||||||||||||||| Sbjct 62159 TACCTCCTCTTAATCG-AAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCA 62101 Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 || | || | ||| || | || || ||||| | || | |||||| || || || Sbjct 62100 CTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGT 62041 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || || || ||||||||| |||||| ||| || | || | || || | || Sbjct 62040 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCA 61981 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | || | ||||| || || || ||||| ||||| || ||||| Sbjct 61980 ACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 >seq266 Length=263831 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| |||||||||||||||||||| ||||| |||| || | ||| || | |||| Sbjct 46264 TGGAGAGTAGACTCTTTTTGAATGTTATAATCACTCAGTGTTCTGCCATCTTCTAACTGT 46323 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || ||||| | || | ||| || ||||| || || || || || |||||| ||||| Sbjct 46324 TTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTA 46383 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 ||| || | || | || || | |||||||| | || | |||||||| || Sbjct 46384 GCTTTCACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTTGCCAGTT 46443 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 | |||||| ||||| || ||||| Sbjct 46444 AAAGTTTTAACAAATATTTGCAT 46466 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||||||||||||||| |||||||||| || | ||| || | |||||| ||| Sbjct 46498 GTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCA 46557 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | ||| || ||||| || || || || || |||||| ||||| ||| Sbjct 46558 GCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCTTTC 46617 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || || | |||||||| | || | |||||||| || | |||| Sbjct 46618 ACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTTGCCAGTTAAAGTT 46677 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 46678 TTAACGAATATTTGCAT 46694 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||||||||||||||| |||||||||| || | ||| || | |||||| ||| Sbjct 46726 GTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCA 46785 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | ||| || ||||| || || || || || |||||| ||||| ||| Sbjct 46786 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTC 46845 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || || | || ||||| | || | |||||||| || | |||| Sbjct 46846 ACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTT 46905 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 46906 TTAACAAATATTTGCAT 46922 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||||||||||||||| |||||||||| || | ||| || | |||||| ||| Sbjct 46954 GTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCA 47013 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | ||| || ||||| || || || || || |||||| ||||| ||| Sbjct 47014 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTC 47073 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || || | || ||||| | || | |||||||| || | |||| Sbjct 47074 ACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTT 47133 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 47134 TTAACAAATATTTGCAT 47150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433719810665872