Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3741 113 5e-20 seq6624 111 2e-19 seq1828 111 2e-19 seq812 111 2e-19 seq128 111 2e-19 seq109 111 2e-19 seq2527 109 6e-19 seq1257 109 6e-19 seq1088 109 6e-19 seq5729 107 2e-18 seq352 107 2e-18 seq177 107 2e-18 seq6034 105 8e-18 seq4446 105 8e-18 seq2209 105 8e-18 seq1934 105 8e-18 seq166 105 8e-18 seq10312 104 3e-17 seq1735 102 9e-17 seq381 102 9e-17 seq24 91.5 2e-13 >seq3741 Length=71184 Score = 113 bits (124), Expect = 5e-20 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || || ||||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 69248 AAGAAATTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 69189 Query 60117 TCACCACTATACTACCGAGGAT 60138 | |||||||||||||||||||| Sbjct 69188 TTACCACTATACTACCGAGGAT 69167 >seq6624 Length=39026 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 15109 AAAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 15168 Query 60118 CACCACTATACTACCGAGGAT 60138 |||||||||||||||||||| Sbjct 15169 TACCACTATACTACCGAGGAT 15189 >seq1828 Length=118641 Score = 111 bits (122), Expect = 2e-19 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| | Sbjct 61809 ATAAAAAAATTACTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 61868 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| ||||||||||||||||||| Sbjct 61869 TACTTACCACTATACTACCGAGGA 61892 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 83271 AAAAAAATACTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 83212 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 83211 TTACCACTATACTACCGAGGA 83191 >seq812 Length=175285 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| ||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 105548 AAACATTGTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 105489 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 105488 TTACCACTATACTACCGAGGA 105468 >seq128 Length=321726 Score = 111 bits (122), Expect = 2e-19 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| || | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 211236 AAACATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 211295 Query 60117 TCACCACTATACTACCGAGGATTGAATATAT 60147 | |||||||||||||||||||| |||||| Sbjct 211296 TTACCACTATACTACCGAGGATGAGATATAT 211326 >seq109 Length=334349 Score = 111 bits (122), Expect = 2e-19 Identities = 96/117 (82%), Gaps = 8/117 (7%) Strand=Plus/Plus Query 60022 TTATGTAATCAGATAACAACAAATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAAT 60081 |||| |||| | ||| || ||||| | ||| |||||| |||| |||| |||||| Sbjct 148682 TTATTTAAT-ATATATAAAAAAATTTA----TATAAAAAAT---CTCCCCGGCGGGGAAT 148733 Query 60082 CGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 60138 ||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 148734 CGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACCGAGGAT 148790 >seq2527 Length=96138 Score = 109 bits (120), Expect = 6e-19 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || |||||| |||| |||| ||||||||||||| ||||||||||||||||||||| | Sbjct 4671 ATAAAAAATAGCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 4612 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 |||| |||||||||||||||||||| Sbjct 4611 TACTTACCACTATACTACCGAGGAT 4587 Score = 107 bits (118), Expect = 2e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||| | ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 58615 AAAATATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTT 58556 Query 60119 ACCACTATACTACCGAGGA 60137 ||||||||||||||||||| Sbjct 58555 ACCACTATACTACCGAGGA 58537 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 70752 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 70693 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 70692 TACTACCGAGGAT 70680 >seq1257 Length=145597 Score = 109 bits (120), Expect = 6e-19 Identities = 83/97 (86%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 60042 AAATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGT 60101 ||||||| ||| ||| || | |||| |||| ||||||||||||| |||||||||||| Sbjct 11788 AAATTAAAACTTA--AAATATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGT 11731 Query 60102 GACAGGCGGACATACTCACCACTATACTACCGAGGAT 60138 ||||||||| ||||| |||||||||||||||||||| Sbjct 11730 GACAGGCGGGGATACTTACCACTATACTACCGAGGAT 11694 Score = 107 bits (118), Expect = 2e-18 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| || | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 17023 AAATATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 16964 Query 60117 TCACCACTATACTACCGAGGAT 60138 | |||||||||||||||||||| Sbjct 16963 TTACCACTATACTACCGAGGAT 16942 >seq1088 Length=154625 Score = 109 bits (120), Expect = 6e-19 Identities = 82/94 (87%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 60044 ATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGA 60103 |||||| |||| ||||| | |||| |||| ||||||||||||| |||||||||||||| Sbjct 117188 ATTAAC-TTTACAAAAAAGTA-CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGA 117131 Query 60104 CAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||||| ||||| ||||||||||||||||||| Sbjct 117130 CAGGCGGGGATACTTACCACTATACTACCGAGGA 117097 >seq5729 Length=46825 Score = 107 bits (118), Expect = 2e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 704 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 763 Query 60126 TACTACCGAGGATTGAA 60142 ||||||||||||| ||| Sbjct 764 TACTACCGAGGATGGAA 780 >seq352 Length=240616 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 48332 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 48391 Query 60125 ATACTACCGAGGAT 60138 |||||||||||||| Sbjct 48392 ATACTACCGAGGAT 48405 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 58543 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 58484 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 58483 TATACTACCGAGGA 58470 >seq177 Length=293256 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 63712 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 63653 Query 60125 ATACTACCGAGGAT 60138 |||||||||||||| Sbjct 63652 ATACTACCGAGGAT 63639 >seq6034 Length=44076 Score = 105 bits (116), Expect = 8e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 36772 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 36713 Query 60126 TACTACCGAGGATTGA 60141 ||||||||||||| || Sbjct 36712 TACTACCGAGGATGGA 36697 >seq4446 Length=60690 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 49422 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 49481 Query 60125 ATACTACCGAGGA 60137 ||||||||||||| Sbjct 49482 ATACTACCGAGGA 49494 >seq2209 Length=105791 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 82526 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 82467 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 82466 TACTACCGAGGAT 82454 >seq1934 Length=114952 Score = 105 bits (116), Expect = 8e-18 Identities = 71/78 (91%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 48884 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 48943 Query 60126 TACTACCGAGGATTGAAT 60143 |||||||||||| ||||| Sbjct 48944 TACTACCGAGGA-TGAAT 48960 >seq166 Length=297740 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 289288 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 289347 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 289348 TACTACCGAGGAT 289360 >seq10312 Length=18237 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 8956 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 8897 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 8896 TACTACCGAGGA 8885 >seq1735 Length=122178 Score = 102 bits (112), Expect = 9e-17 Identities = 97/120 (81%), Gaps = 13/120 (11%) Strand=Plus/Plus Query 60020 TTTTATGTAATCAG-ATAACAACAAATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGG 60078 |||||| ||| || ||||||| ||||||| |||||| |||| |||| ||| Sbjct 2335 TTTTATATAA--AGTATAACAA-AAATTAAT-------AAAAATA--CTCCCCGGCGGGG 2382 Query 60079 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 60138 |||||||||| |||||||||||||||| |||| ||||| |||||||||||||||||||| Sbjct 2383 AATCGAACCCCGGTCTCCCGCGTGACAAGCGGGGATACTTACCACTATACTACCGAGGAT 2442 >seq381 Length=234029 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| | || ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 82743 TCTCCCCAGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 82802 Query 60125 ATACTACCGAGGAT 60138 |||||||||||||| Sbjct 82803 ATACTACCGAGGAT 82816 >seq24 Length=448628 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || |||||||| ||||| ||| ||||| | | | || |||| ||||||||||| || Sbjct 62805 TCTTTTTGAATGTTGTAGTCACTGAGAGTTCTCCCATCCTCTAATTGCTTACCAGCAAAA 62746 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||||||||||| | || | | ||||||| | ||| |||| | || ||| Sbjct 62745 ATTAAACGCTGCTGGTCTGGTGGAATACCTTCCTTGT-CTTGAATTTTAGCTTTTACGTT 62687 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||| || | ||| || || | ||||||||||| || || || || ||||| Sbjct 62686 GTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTAC 62627 Query 43172 AAAGATTTGCAT 43183 ||| |||||||| Sbjct 62626 AAATATTTGCAT 62615 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||||||| || | || | ||| | ||| || |||||||| ||||||||| Sbjct 62157 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTT 62098 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | | || |||| ||||||||||| || || | ||||| ||||| | || Sbjct 62097 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGA 62038 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | ||||||| | ||| |||| | || ||| | | | ||| || | ||| || Sbjct 62037 ATACCTTCCTTGT-CTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAAC 61979 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||||||| || || || || || ||||| |||||||| Sbjct 61978 CTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571668098288480