Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq266 109 8e-19 seq2327 98.7 1e-15 seq5503 84.2 3e-11 seq1713 84.2 3e-11 >seq266 Length=263831 Score = 109 bits (120), Expect = 8e-19 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | || | || | ||| | |||||| ||||| || |||||||| Sbjct 46239 TCCCCCTCTTAATCGAAGAACTAGATGGAGAGTAGACTCTTTTTGAATGTTATAATCACT 46298 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || ||||||| ||| ||||| ||||| |||||||||||||| | ||| ||||| || || Sbjct 46299 CAGTGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 46358 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 || |||||||| ||||| |||||| | | ||| || Sbjct 46359 GATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGAC 46418 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || | |||||| ||||| || ||||| ||||||| ||||||||||| Sbjct 46419 CTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46466 Score = 102 bits (112), Expect = 1e-16 Identities = 127/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| || ||||||| ||| ||||| ||||| |||||||||||||| | | Sbjct 46513 ATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGT 46572 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 || ||||| || || || |||||||| ||||| |||| Sbjct 46573 TGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTA 46632 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || | | ||| || || | |||||| ||||| || ||||| ||||||| |||||||||| Sbjct 46633 TCAGCAGGTTCGACCTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACGAATATTTGC 46692 Query 146276 AT 146277 || Sbjct 46693 AT 46694 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/182 (69%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| || ||||||| ||| ||||| ||||| |||||||||||||| | | Sbjct 46741 ATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGT 46800 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 || ||||| || ||||| |||||||| ||||| |||| Sbjct 46801 TGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTA 46860 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || | | ||| || || | ||| || ||||| || ||||| ||||||| ||||||||| Sbjct 46861 TCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGC 46920 Query 146276 AT 146277 || Sbjct 46921 AT 46922 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/182 (69%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| || ||||||| ||| ||||| ||||| |||||||||||||| | | Sbjct 46969 ATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGT 47028 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 || ||||| || ||||| |||||||| ||||| |||| Sbjct 47029 TGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTA 47088 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || | | ||| || || | ||| || ||||| || ||||| ||||||| ||||||||| Sbjct 47089 TCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGC 47148 Query 146276 AT 146277 || Sbjct 47149 AT 47150 >seq2327 Length=102395 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| |||||||| || | ||| | ||||| || ||| || || |||||||| Sbjct 34858 CCACCTCTGAGTCTTAAAACGAGATGAAGTGTAGACTCCTTTTGA-ATGTTATAATCACT 34916 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || || | ||| ||||| || ||||||||||| || | || |||||| || || || Sbjct 34917 TAATGTCCTTCCATCTTCTAACTGCTTTCCAGCAAAGATAAGTCGTTGCTGGTCTGGTGG 34976 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| |||||||||||||| Sbjct 34977 AATACCTTCTTTATCTTG 34994 >seq5503 Length=48954 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||||||||| || | |||||| | ||| || | |||||| ||||||||||| |||| Sbjct 3724 ATATTATAATCAGACAAAGTTCTCCCATCTTCCAGTTGTTTACCAGCAAAAATTAATCGC 3665 Query 146156 TGCTGATCCGGAGGAATTCCT 146176 || ||||| |||||||||||| Sbjct 3664 TGTTGATCTGGAGGAATTCCT 3644 >seq1713 Length=122895 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||||||||| || | |||||| | ||| || | |||||| ||||||||||| |||| Sbjct 121723 ATATTATAATCAGACAAAGTTCTCCCATCTTCCAGTTGTTTACCAGCAAAAATTAATCGC 121664 Query 146156 TGCTGATCCGGAGGAATTCCT 146176 || ||||| |||||||||||| Sbjct 121663 TGTTGATCTGGAGGAATTCCT 121643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743332005022720