Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2421 181 1e-40 >seq2421 Length=99546 Score = 181 bits (200), Expect = 1e-40 Identities = 217/293 (74%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 16312 TTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGC 16371 |||||||| |||||||||||| ||||| || || ||||| || || ||||| ||||| || Sbjct 31725 TTTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCAGC 31666 Query 16372 AAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct--atccattttttagcc 16429 ||||||||| | || ||| | | | | | |||| | ||||||||| ||| Sbjct 31665 AAATGCAACAACACGTTCAGAGAAAGAAGCACAAT--CTTTGTTAATCCATTTTAGTGCC 31608 Query 16430 caatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttt 16489 ||| |||||||| || ||||||| |||| | || |||||||||||||||| ||| Sbjct 31607 CAAACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAAATAAATTTGACTTT 31548 Query 16490 tCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549 ||| | |||| ||| |||||| || |||||| |||||||||||| || || || Sbjct 31547 TCTATCGGATCTTTAATGAGAGTATCAATGAGTAAAGAATACATTTCTGAGTGGATGTTT 31488 Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || ||||| || ||||| |||||||| ||| ||||| | || ||| ||||| Sbjct 31487 TCAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTCTGGTAGTTGAACTTC 31435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462391076237600