Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq266 96.9 3e-15 seq24 93.3 3e-14 >seq266 Length=263831 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 18092 TTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTA 18151 || |||||| || | || || ||| || | || || || || |||||||||||||| || Sbjct 46233 TTTTTATCCCCCTCTTAATCGAAGAACTAGATGGAGAGTAGACTCTTTTTGAATGTTATA 46292 Query 18152 GTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 || || |||| | | |||||| || ||||| || ||| | || | | ||||||||| Sbjct 46293 ATCACTCAGTGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATC 46352 Query 18212 CACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGG 18270 || | ||||| || || |||| | || || || | ||| ||| ||| | | Sbjct 46353 TGGTGGGATACCTTCTTTGTCTTGGATTT-TAGCTTTCACATTGTCAATAGTATCAGCAG 46411 Query 18271 GCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||| || | |||||| ||||||| || || ||||| ||||| |||||||| Sbjct 46412 GTTCGACCTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46466 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 || ||| || | |||||| ||||| |||||||||||||| || ||| || ||| | | Sbjct 46479 TCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCC 46538 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||| || ||||| || ||| | || | | ||||||||| || | ||||| || Sbjct 46539 ATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTT 46598 Query 18230 ATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGA 18288 || |||| | || || || | ||| ||| ||| | || ||| || | |||| Sbjct 46599 GTCTTGGATTT-TAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGA 46657 Query 18289 TGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||||| || || ||||| || || |||||||| Sbjct 46658 TGGTTTTGCCAGTTAAAGTTTTAACGAATATTTGCAT 46694 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 || ||| || | |||||| ||||| |||||||||||||| || ||| || ||| | | Sbjct 46707 TCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCC 46766 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||| || ||||| || ||| | || | | ||||||||| || | ||||| || Sbjct 46767 ATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTT 46826 Query 18230 ATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGA 18288 || |||| | || || || | ||| ||| ||| | || || || | || | Sbjct 46827 GTCTTGGATTT-TAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAA 46885 Query 18289 TGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||||| || || ||||| ||||| |||||||| Sbjct 46886 TGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46922 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 || ||| || | |||||| ||||| |||||||||||||| || ||| || ||| | | Sbjct 46935 TCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCC 46994 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||| || ||||| || ||| | || | | ||||||||| || | ||||| || Sbjct 46995 ATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTT 47054 Query 18230 ATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGA 18288 || |||| | || || || | ||| ||| ||| | || || || | || | Sbjct 47055 GTCTTGGATTT-TAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAA 47113 Query 18289 TGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||||| || || ||||| ||||| |||||||| Sbjct 47114 TGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 47150 >seq24 Length=448628 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || || ||| || | ||||| || |||||||||||||| |||||||| Sbjct 62613 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTT 62554 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| ||| |||||| ||||| || || ||| | || | | |||||||| || Sbjct 62553 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGA 62494 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||||| | || || || | ||| || ||| | || || Sbjct 62493 ATACCTTCTTTGTCTTGAATTT-TAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAAC 62435 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| |||| || || | ||||||||||| |||||||| Sbjct 62434 CTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62387 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || || ||| || | ||||| || |||||||||||||||||||| || Sbjct 62157 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTT 62098 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| ||| |||||| ||||| || || ||| | || | | ||||| || || Sbjct 62097 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGA 62038 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||||| | || || || | ||| || ||| | || || Sbjct 62037 ATACCTTCCTTGTCTTGAATTT-TAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAAC 61979 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| |||| || || | ||||| ||||| |||||||| Sbjct 61978 CTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || || ||| || | ||||| || |||||||||||||| |||||||| Sbjct 62385 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTT 62326 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| ||| |||||| ||||| || || ||| | || | | |||||||| || Sbjct 62325 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGA 62266 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||||| | || || || | ||| || ||| | || || Sbjct 62265 ATACCTTCTTTGTCTTGAATTT-TAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAAC 62207 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| |||| || || | ||||| ||||| |||||||| Sbjct 62206 CTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 62159 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || || ||| || | ||||| || |||||||||||||||||||| || Sbjct 61929 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTT 61870 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 | |||| ||| |||||| || || ||||| ||| |||| | | ||||||||| Sbjct 61869 AATGTTCTACCATCTTCTAACTGCTTGCCAGCAAAGATTAAACGTTGTTGATC 61817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379247299998420