Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq266 91.5 1e-13 >seq266 Length=263831 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| |||||||||||||| ||||| |||||||| || || | || |||||| | Sbjct 46466 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCT 46407 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | || | ||| || | ||||| | |||||||| | || || || Sbjct 46406 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 46347 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| || ||||| | |||||| || || ||| ||||| | | Sbjct 46346 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACACTGAGTGATTATAAC 46287 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATT 25049 || || |||||| | || || ||| |||| | ||||| Sbjct 46286 ATTCAAAAAGAGTCTACTCTCCATCTAGTTCTTCGATT 46249 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| |||||||||||||| ||||| |||||||| || || | || || ||| | Sbjct 46922 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCT 46863 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | || | ||| || | ||||| | |||||||| | || || || Sbjct 46862 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 46803 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| || ||||| | |||||| || || ||| |||||| | | Sbjct 46802 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAAC 46743 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || |||||| | || ||||| | || | |||||| | || ||| Sbjct 46742 ATTCAAAAAGAGTCAACCCTTCACCTTGTTCTTCGATTGAGAGGTGGT 46695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| |||||||||||||| ||||| |||||||| || || | || || ||| | Sbjct 47150 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCT 47091 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | || | ||| || | ||||| | |||||||| | || || || Sbjct 47090 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 47031 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| || ||||| | |||||| || || ||| |||||| | | Sbjct 47030 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAAC 46971 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || |||||| | || ||||| | || | |||||| | || ||| Sbjct 46970 ATTCAAAAAGAGTCAACCCTTCACCTTGTTCTTCGATTGAGAGGTGGT 46923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418197368558720