Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2421 138 1e-27 seq4963 132 6e-26 >seq2421 Length=99546 Score = 138 bits (152), Expect = 1e-27 Identities = 211/294 (72%), Gaps = 9/294 (3%) Strand=Plus/Minus Query 33660 TTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCA 33719 ||||||||||||||||| | || || ||||| ||||| || |||||||| ||||||||| Sbjct 31724 TTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCAGCA 31665 Query 33720 AAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT-GT--ATCCACTTTTGAGCCCAA 33776 || |||| || | || || || | || | || ||||| ||| | |||||| Sbjct 31664 AATGCAACAACACGTTCAGAGAAAGAAGCACAATCTTTGTTAATCCATTTTAGTGCCCAA 31605 Query 33777 TCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCA 33836 | || || |||| ||||| ||||| ||||| || |||||||| | || ||||| Sbjct 31604 ACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAAATAAATTTGACTTTTCT 31545 Query 33837 TTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTT 33894 | |||||||| |||||| || | ||||| ||||||||| || || ||||||| Sbjct 31544 ATCGGATCTTTAATGAGAGTATCAATGAGTAAAGA--ATACATTTCTGAGTGGATGTTTT 31487 Query 33895 CAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGCACTTCT 33947 |||| || || ||||| || || || ||| || || |||| | || |||||| Sbjct 31486 CAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTCTGGTAGT-TGAACTTCT 31434 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/200 (72%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 34028 |||||||| || |||||||| || || ||||| || || | ||||| |||||||| Sbjct 31317 TTTTCATTAACAATTCCATCGCTAGCAGCAAAGAATGCAAGAACATGAGAGATAAAATAC 31258 Query 34029 TTTTCGTCTGGTGTTAG--TTTATTCC-AATCATTGATATCTTTAGATATATCCACTTCT 34085 ||||| | || | || ||| |||| ||| | ||| || | ||| |||||| Sbjct 31257 TTTTCCTGAGGCTTCAGCTTTTCTTCCCAATGAACTGCATCAGCAGCCAAATCAACTTCT 31198 Query 34086 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 34145 || ||||||||||| || || || || | || ||||| ||||| || || | |||||| Sbjct 31197 TCAACTGTCCAAAACGAGGCTTCAGCTTGCTTGTACATTTTCCATATATCTTTATATTGA 31138 Query 34146 ATTGGGAAAATAACAAATCT 34165 ||||| || | |||||| || Sbjct 31137 ATTGGAAATAAAACAAACCT 31118 Score = 86.0 bits (94), Expect = 8e-12 Identities = 165/242 (68%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 33408 ATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCA---TTTCACAATTCATTCCT 33464 || |||||||| || ||||| |||||||||||||| | ||| | ||||||||| Sbjct 32375 ATTAATCTATCAGCACAAAATTCAATATATGTTTTCATAAGACTTTTA---TTCATTCCT 32319 Query 33465 ATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTT 33524 | || | | || | || | |||| | ||| || |||||| | ||| |||| | Sbjct 32318 AAAAGATCACAGGGTAAAGACTCAGTCAAAAACTCAATTTCAATAGCTACAGCATCTCGA 32259 Query 33525 ATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACAT 33584 ||||| | | || ||||||| || | || | ||||||| |||| | |||| Sbjct 32258 ATAATTTGTTTTACTCGTTCTTCAGAAGGCTTGTTTACAATATGTTTATACATAAGACAT 32199 Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 || || || || || | |||||| |||||||| || ||||| || || || || | ||| Sbjct 32198 GCAAAGTCACAATGTAAACCCTCATCTCTACTGATCAATTCATTTGAGAAAGTTACTCCA 32139 Query 33645 GG 33646 || Sbjct 32138 GG 32137 >seq4963 Length=54722 Score = 132 bits (146), Expect = 6e-26 Identities = 220/315 (70%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 ||||| || || || ||| ||| || || | ||||||| |||| | || ||| | || Sbjct 22410 AGACCAATGCCACCAGCCCATTTTGAAATAATTGCGCATTGTTTAACAGTATCAAAAATT 22469 Query 63603 CCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGT 63661 ||||| || |||||| ||| | ||| || ||||||||| ||||| || | | | Sbjct 22470 CCTTCAATACTATCACTCTGCATAGCTAA-TAAAAAACAGCTTGACATCTGAGGTCTGGG 22528 Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 || || | ||| ||||| |||||||| || || |||||||||||||| || | || ||| Sbjct 22529 GGTGCCAGAATTGAATAATGTAGGAGAGGCATGAGTAAACCATTTTTCTGACATTAAATT 22588 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || || ||||| | || | ||| ||| || || || | || | ||| || Sbjct 22589 ATATGTTTCTATAGCAGCATCAAGATCTTCACCATGTATACCAACAGATACTCTCATCAA 22648 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||| ||||| || ||| || |||| || ||||| | ||| || ||| |||| | Sbjct 22649 CATGTGTTGAGGCCTCTCAGCAGTTTTACCATTAATTTTTAGCAAATAAGATCTTTCAAG 22708 Query 63842 AGTTTTAAAACCAAA 63856 ||| | || | |||| Sbjct 22709 AGTCTAAATATCAAA 22723 Score = 111 bits (122), Expect = 2e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 63324 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63383 || ||||| || || ||||| ||||| | || | || | |||||||||| |||||| Sbjct 22086 TGCTCCTCTTTACCAGTATTTTTTTTTAAGTCTAAAAAGTCTATAATATCAGCATGCCAA 22145 Query 63384 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63443 || || ||||| ||||| || || || || ||||| ||||||||||| | ||||| Sbjct 22146 GGCTCTAAGTAGATGGCAATTGAGCCTGGTCGCTTGTTACCTCCCTGATCAACATATCTT 22205 Query 63444 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63499 || || |||||| | ||||| ||||| ||||| || || || || |||||| || Sbjct 22206 GCAGTATTATTAAATACTCTTAACATGGGAATTATTCCATTCGAATGACCATTTGT 22261 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 62382 TTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62441 ||||| ||||| ||||||||||| | ||||| | || |||||||| | || || ||| Sbjct 15782 TTAACAACTTGAAATTCTCCAGAAAGCACTCTTCTAGAATAAATATTGTTAGTGTATGGT 15841 Query 62442 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62501 || | || ||||| || || | ||||||||| || || || || |||||||| || || Sbjct 15842 TCAATTGATTCATTGTTGCCAAGAATTTGAGCTGTAGAGGCTGTTGGCATAGGAGCAACT 15901 Query 62502 AATAAACTATTTCTAAGACC 62521 |||||||| |||| || ||| Sbjct 15902 AATAAACTGTTTCGAACACC 15921 Score = 100 bits (110), Expect = 4e-16 Identities = 190/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 63038 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 63097 || ||||||||| ||| | || || ||| |||||||| ||| | || || ||||| || Sbjct 21392 TTTTTGATTACTTTTTCTATTGCAACTATCTTTATAAAGCATGTAAGGGGTTCCAGTCTC 21451 Query 63098 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT 63157 |||| ||||||| |||||| ||| | | |||| ||| | | |||| Sbjct 21452 TGTCTGGGATTCTAAAATCGCAAACCACAACTTTTGAGCTGGAATTTGTTTTCTATATCG 21511 Query 63158 CCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC-A 63216 || ||| ||||| ||| |||||| |||||| || || ||| |||| | | | Sbjct 21512 CCCTTCGCTTTCATATTTCTGATACAACTCTTCGAATTCTTC-CCCATAACAGTCAGCTA 21570 Query 63217 ATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63276 | | ||||||||||| |||||||| || |||||| || | || | |||| | ||| Sbjct 21571 AACCAGGACATTCATGAGGACACATTAATGACCACATACCTTTCTCTTCTACTCTTCTCA 21630 Query 63277 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 63313 |||| || || |||| ||||||| | | ||| | ||| Sbjct 21631 TAAATAGGTCGGGAACCCAAAGACCAAAAAACAAATC 21667 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 62772 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC-AGCTTCTGG 62830 ||| | |||||||||||||| ||||||||||| ||| | || || ||||| ||| || || Sbjct 20219 AATACCTGAACACCAATACCTATAGGTCTATGCCTCATGTTTGA-ATTTCGAGCCTCAGG 20277 Query 62831 AATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCAC 62890 || || ||| | || |||||||| ||||| |||||||| || |||||| || Sbjct 20278 AACTGGGTAAAAGTTTCGATCTATAACCTTATTTAGATTTCTTGTTATCACTTTGGTGAC 20337 Query 62891 ATCCTTCAGTTTGAGAAAATCA 62912 || ||| | ||| ||||||| Sbjct 20338 ATACTTTAATTTCTTAAAATCA 20359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629652934188480