Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4963 168 6e-37 seq2421 131 2e-25 >seq4963 Length=54722 Score = 168 bits (186), Expect = 6e-37 Identities = 213/293 (73%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 38296 CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCT 38355 || || ||||| || |||||| || | ||||||||||| | |||||||| || ||| Sbjct 22413 CCAATGCCACCAGCCCATTTTGAAATAATTGCGCATTGTTTAACAGTATCAAAAATTCCT 22472 Query 38356 TCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTT 38415 || ||||| ||| || || | || || |||||| || ||||| ||||| || || Sbjct 22473 TCAATACTATCACTCTGCATAGCTAATAAAAAACAGCTTGACATCTGAGGTCTGGGGGTG 22532 Query 38416 CCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATAT 38475 || | || |||||||||||||| ||||| | ||||||||||| |||| |||||||| Sbjct 22533 CCAGAATTGAATAATGTAGGAGAGGCATGAGTAAACCATTTTTCTGACATTAAATTATAT 22592 Query 38476 GTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATA 38535 |||||||| || |||| | ||| | || || ||||| | |||||| ||||| | ||| Sbjct 22593 GTTTCTATAGCAGCATCAAGATCTTCACCATGTATACCAACAGATACTCTCATCAACATG 22652 Query 38536 TGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTC 38588 ||||| || || || ||||| ||| ||| || | ||| ||| |||| Sbjct 22653 TGTTGAGGCCTCTCAGCAGTTTTACCATTAATTTTTAGCAAATAAGATCTTTC 22705 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 37290 TTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAG 37349 ||||||||| ||| | ||| |||| |||||| || ||||||||||||||| || Sbjct 16069 TTTTAGTTCTGCCCAGTTCCACAAATTTGTTGGTGTCACATTCCACATATCATATTGAAG 16128 Query 37350 AATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAG 37409 || |||||||| || || | | || ||||||||| || | ||| ||||| Sbjct 16129 TATTCCTTTACTAATAGGTGACCCTTGGTAACTCTCATAAGTCCCATCTTTTTCAGCTAA 16188 Query 37410 TTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATAT 37469 ||| ||| | ||||| ||| ||||||| |||||||| ||||| ||| |||| | || Sbjct 16189 TTCACAAGATGCTTCTAATGCACCATAATAAATTGTTTCAAAAATCTGTTTATTAAGTAG 16248 Query 37470 TTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCT 37528 | ||||| || || |||| | | | || || || ||| ||||||| | ||||| Sbjct 16249 ACTAGCTTCATCAGATTCAAATGGAAATCGCATCAAAATGAACGCATCAGCTAGACCCT 16307 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 37111 AGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTA 37170 || ||| ||| || ||| ||| ||||| ||||| |||||||| | |||||||| | | Sbjct 15761 AGATCTTTCATTAAATGTTTATTAACAACTTGAAATTCTCCAGAAAGCACTCTTCTAGAA 15820 Query 37171 TATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGAT 37230 || |||||| |||| ||||||||||| || ||||| || | | ||||||| |||||| Sbjct 15821 TAAATATTGTTAGTGTATGGTTCAATTGATTCATTGTTGCCAAGAATTTGAGCTGTAGAG 15880 Query 37231 GCAGTAGGCATTGGTGC 37247 || || ||||| || || Sbjct 15881 GCTGTTGGCATAGGAGC 15897 Score = 98.7 bits (108), Expect = 9e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 38091 ATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGA 38150 ||| ||| ||||| || ||| || | |||||||| ||||| || |||| || || | Sbjct 22103 ATTTTTTTTTAAGTCTAAAAAGTCTATAATATCAGCATGCCAAGGCTCTAAGTAGATGGC 22162 Query 38151 CATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATAT 38210 |||| ||||||| || | ||||||||||| || |||||| | || |||||| ||| Sbjct 22163 AATTGAGCCTGGTCGCTTGTTACCTCCCTGATCAACATATCTTGCAGTATTATTAAATAC 22222 Query 38211 TCTTAACATAGGTACTATACCATTAGA 38237 ||||||||| || | ||| ||||| || Sbjct 22223 TCTTAACATGGGAATTATTCCATTCGA 22249 >seq2421 Length=99546 Score = 131 bits (144), Expect = 2e-25 Identities = 205/294 (70%), Gaps = 16/294 (5%) Strand=Plus/Minus Query 11697 TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCT 11756 ||||| | | |||||| | |||||||||||| ||||| || || ||||| || ||||| | Sbjct 31734 TCAATAC-CTTTTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTT 31676 Query 11757 CCACAGCTGCAAATGCTACTACTCTTTCTC---------CATATACCTTGTTGCTAGATA 11807 |||| || |||||||| || || | ||| || | | ||||| | Sbjct 31675 CCACTGCAGCAAATGCAACAACACGTTCAGAGAAAGAAGCACAATCTTTGTTA------A 31622 Query 11808 TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAA 11867 |||||||| |||||| | ||||| |||| || || ||| ||||| || || |||| Sbjct 31621 TCCATTTTAGTGCCCAAACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAA 31562 Query 11868 ATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTT 11927 |||||| |||||||| |||| | | ||||| || | |||| |||||||| Sbjct 31561 ATAAATTTGACTTTTCTATCGGATCTTTAATGAGAGTATCAATGAGTAAAGAATACATTT 31502 Query 11928 CTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 |||| || || ||||| || || |||||||| ||||| || || ||| |||| Sbjct 31501 CTGAGTGGATGTTTTCAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTCTG 31448 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/201 (71%), Gaps = 5/201 (2%) Strand=Plus/Minus Query 12017 TTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTAT 12076 || ||||| ||||| ||||| |||| ||||| ||||| || | ||| ||||| || Sbjct 31317 TTTTCATTAACAATTCCATCGCTAGCAGCAAAGAATGCAAGAACATGAGAGATAAAATAC 31258 Query 12077 TTTTCGT----CTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTC 12132 ||||| | ||| || | | | ||||||| | || ||| | ||||| ||||| Sbjct 31257 TTTTCCTGAGGCTTCAGCTTTTCT-TCCCAATGAACTGCATCAGCAGCCAAATCAACTTC 31199 Query 12133 TTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTT 12192 |||||| |||||||| || | | ||| || ||||||||||| ||||| | ||| | Sbjct 31198 TTCAACTGTCCAAAACGAGGCTTCAGCTTGCTTGTACATTTTCCATATATCTTTATATTG 31139 Query 12193 AATAGGGAAAATAACGAACCT 12213 ||| || || | ||| ||||| Sbjct 31138 AATTGGAAATAAAACAAACCT 31118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468402304191040