Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2421 147 3e-30 seq4963 129 8e-25 >seq2421 Length=99546 Score = 147 bits (162), Expect = 3e-30 Identities = 213/294 (72%), Gaps = 9/294 (3%) Strand=Plus/Minus Query 36236 TTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCA 36295 ||||||||||||||||| | ||||| ||||| ||||| ||||||||||| ||||| ||| Sbjct 31724 TTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCAGCA 31665 Query 36296 AAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT-GT--ATCCACTTTTGAGCCCAA 36352 || |||| || | || || |||| || | || ||||| ||| | |||||| Sbjct 31664 AATGCAACAACACGTTCAGAGAAAGAAGCACAATCTTTGTTAATCCATTTTAGTGCCCAA 31605 Query 36353 TCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCA 36412 | || || |||| ||||| ||||| || || || |||||||| | || ||||| Sbjct 31604 ACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAAATAAATTTGACTTTTCT 31545 Query 36413 TTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTT 36470 | |||||||| |||||||| | ||||| ||||||||| || || ||||||| Sbjct 31544 ATCGGATCTTTAATGAGAGTATCAATGAGTAAAGA--ATACATTTCTGAGTGGATGTTTT 31487 Query 36471 CAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGTACTTCT 36523 |||| || |||||||| || || || ||| || || |||| | || |||||| Sbjct 31486 CAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTCTGGTAGT-TGAACTTCT 31434 Score = 116 bits (128), Expect = 5e-21 Identities = 174/244 (71%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 35984 ATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCA---TTTCACAATTCATTCCT 36040 || |||||||| || |||||| |||||||||||||| | ||| | ||||||||| Sbjct 32375 ATTAATCTATCAGCACAAAATTCAATATATGTTTTCATAAGACTTTTA---TTCATTCCT 32319 Query 36041 ATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTT 36100 | ||| | | || | || | |||| | ||| || |||||||| || || ||| Sbjct 32318 AAAAGATCACAGGGTAAAGACTCAGTCAAAAACTCAATTTCAATAGCTACAGCATCTCGA 32259 Query 36101 ATAATAGATATTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAAC 36158 ||||| | ||||| ||||||| || || |||||| ||||||| |||| | || Sbjct 32258 ATAATTTGTTTTACTCGTTCTTCAGAAGGCTTGTTTACAAT--ATGTTTATACATAAGAC 32201 Query 36159 ATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 36218 |||| || || || |||| |||||| |||||||| || ||||| || || || || | || Sbjct 32200 ATGCAAAGTCACAATGTAAACCCTCATCTCTACTGATCAATTCATTTGAGAAAGTTACTC 32141 Query 36219 CGGG 36222 | || Sbjct 32140 CAGG 32137 Score = 102 bits (112), Expect = 1e-16 Identities = 144/200 (72%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 36545 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 36604 |||||||| || ||||| || || || ||||| || || | ||||| |||||||| Sbjct 31317 TTTTCATTAACAATTCCATCGCTAGCAGCAAAGAATGCAAGAACATGAGAGATAAAATAC 31258 Query 36605 TTTTCGTTTGGTGTTAG--TTTATTCC-AATCATTGATATCTTTAGATATATCCACTTCT 36661 ||||| | || | || ||| |||| ||| | ||| || | ||| |||||| Sbjct 31257 TTTTCCTGAGGCTTCAGCTTTTCTTCCCAATGAACTGCATCAGCAGCCAAATCAACTTCT 31198 Query 36662 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 36721 || ||||||||||| || || || || | || ||||| ||||| || || | ||||||| Sbjct 31197 TCAACTGTCCAAAACGAGGCTTCAGCTTGCTTGTACATTTTCCATATATCTTTATATTGA 31138 Query 36722 ATTGGAAAAATAACAAATCT 36741 |||||||| | |||||| || Sbjct 31137 ATTGGAAATAAAACAAACCT 31118 >seq4963 Length=54722 Score = 129 bits (142), Expect = 8e-25 Identities = 219/315 (70%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 ||||| || || || ||| ||| || || | ||||||| |||| | |||||| | || Sbjct 22410 AGACCAATGCCACCAGCCCATTTTGAAATAATTGCGCATTGTTTAACAGTATCAAAAATT 22469 Query 66396 CCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 66454 || || ||||||||| | ||| | ||| || ||||||||| ||||| || | | Sbjct 22470 CCTTCAATACTATCACTCTGCATAGCTAA-TAAAAAACAGCTTGACATCTGAGGTCTGGG 22528 Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 || || | ||| ||||| |||||||| || || |||||||||||||| || | || ||| Sbjct 22529 GGTGCCAGAATTGAATAATGTAGGAGAGGCATGAGTAAACCATTTTTCTGACATTAAATT 22588 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || || ||||| | || | ||| ||| || || || | || | ||| || Sbjct 22589 ATATGTTTCTATAGCAGCATCAAGATCTTCACCATGTATACCAACAGATACTCTCATCAA 22648 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||| ||||| || ||| | | || || ||||| | ||| || ||| |||| | Sbjct 22649 CATGTGTTGAGGCCTCTCAGCAGTTTTACCATTAATTTTTAGCAAATAAGATCTTTCAAG 22708 Query 66635 AGTTTTAAAACCAAA 66649 ||| | || | |||| Sbjct 22709 AGTCTAAATATCAAA 22723 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 65118 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 65177 ||||| || | ||| | |||||| || || || | | || | | | ||| |||| Sbjct 15725 TTCTTCATGTTATCGTCCCATAAGTTAAGATCAGTAAGATCTTTCATTAAATGTTTATTA 15784 Query 65178 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 65237 || ||||||||||||||||| | ||||| | || |||||||| | || || ||||| Sbjct 15785 ACAACTTGAAATTCTCCAGAAAGCACTCTTCTAGAATAAATATTGTTAGTGTATGGTTCA 15844 Query 65238 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 65297 | || ||||| || || | ||||||||| || || || || |||||||| || || ||| Sbjct 15845 ATTGATTCATTGTTGCCAAGAATTTGAGCTGTAGAGGCTGTTGGCATAGGAGCAACTAAT 15904 Query 65298 AAACTATTTCTAAGACC 65314 ||||| |||| || ||| Sbjct 15905 AAACTGTTTCGAACACC 15921 Score = 113 bits (124), Expect = 6e-20 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 66117 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCAC 66176 || ||||| || || ||||| ||||| | || | || | ||||||||| |||||| Sbjct 22086 TGCTCCTCTTTACCAGTATTTTTTTTTAAGTCTAAAAAGTCTATAATATCAGCATGCCAA 22145 Query 66177 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 66236 || || ||||| ||||| || || || || ||||| ||||||||||| | ||||| Sbjct 22146 GGCTCTAAGTAGATGGCAATTGAGCCTGGTCGCTTGTTACCTCCCTGATCAACATATCTT 22205 Query 66237 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTC 66293 || || |||||| | ||||| ||||| ||||| || ||||| || |||||| ||| Sbjct 22206 GCAGTATTATTAAATACTCTTAACATGGGAATTATTCCATTCGAATGACCATTTGTC 22262 Score = 105 bits (116), Expect = 9e-18 Identities = 191/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 65831 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 65890 || ||||||||| ||| | || || ||| |||||||| ||| | || || ||||| || Sbjct 21392 TTTTTGATTACTTTTTCTATTGCAACTATCTTTATAAAGCATGTAAGGGGTTCCAGTCTC 21451 Query 65891 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT 65950 |||| ||||||| |||||| ||| | | |||| ||| | | |||| Sbjct 21452 TGTCTGGGATTCTAAAATCGCAAACCACAACTTTTGAGCTGGAATTTGTTTTCTATATCG 21511 Query 65951 CTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC-A 66009 | ||| ||||| ||| |||||| |||||| || || ||| |||| | | | Sbjct 21512 CCCTTCGCTTTCATATTTCTGATACAACTCTTCGAATTCTTC-CCCATAACAGTCAGCTA 21570 Query 66010 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 66069 | ||||||||||||| |||||||| || |||||| || | || | |||| | ||| Sbjct 21571 AACCAGGACATTCATGAGGACACATTAATGACCACATACCTTTCTCTTCTACTCTTCTCA 21630 Query 66070 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATC 66106 |||| || || |||| ||||||| | | ||| ||||| Sbjct 21631 TAAATAGGTCGGGAACCCAAAGACCAAAAAACAAATC 21667 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC-AGCTTCTGG 65623 ||| | |||||||||||||| ||||||||||| ||| | || || ||||| ||| || || Sbjct 20219 AATACCTGAACACCAATACCTATAGGTCTATGCCTCATGTTTGA-ATTTCGAGCCTCAGG 20277 Query 65624 AATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCAC 65683 || || ||| | || |||||||| ||||| |||||||| || |||||| || Sbjct 20278 AACTGGGTAAAAGTTTCGATCTATAACCTTATTTAGATTTCTTGTTATCACTTTGGTGAC 20337 Query 65684 ATCCTTCAGTTTGAGAAAATCA 65705 || ||| | ||| ||||||| Sbjct 20338 ATACTTTAATTTCTTAAAATCA 20359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658000720721440