Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2421 138 2e-27 seq4963 132 7e-26 >seq2421 Length=99546 Score = 138 bits (152), Expect = 2e-27 Identities = 211/294 (72%), Gaps = 9/294 (3%) Strand=Plus/Minus Query 50038 TTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCA 50097 ||||||||||||||||| | ||||| || || ||||| || |||||||| ||||| ||| Sbjct 31724 TTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCAGCA 31665 Query 50098 AAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT-GT--ATCCACTTTTGAGCCCAA 50154 || ||||||| | || || || | || | || ||||| ||| | |||||| Sbjct 31664 AATGCAACAACACGTTCAGAGAAAGAAGCACAATCTTTGTTAATCCATTTTAGTGCCCAA 31605 Query 50155 TCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCA 50214 | || || |||| ||||| ||||| ||||| || |||||||| | || ||||| Sbjct 31604 ACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAAATAAATTTGACTTTTCT 31545 Query 50215 TTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTT 50272 | |||||||| |||||| || | ||||| ||||||||| || || ||||||| Sbjct 31544 ATCGGATCTTTAATGAGAGTATCAATGAGTAAAGA--ATACATTTCTGAGTGGATGTTTT 31487 Query 50273 CAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGCACTTCT 50325 |||| || || ||||| || || || ||| || || |||| | || |||||| Sbjct 31486 CAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTCTGGTAGT-TGAACTTCT 31434 Score = 98.7 bits (108), Expect = 1e-15 Identities = 170/244 (70%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 49786 ATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCA---TTTCACAATTCATTCCT 49842 || |||||||| || |||||| |||||||||||||| | ||| | ||||||||| Sbjct 32375 ATTAATCTATCAGCACAAAATTCAATATATGTTTTCATAAGACTTTTA---TTCATTCCT 32319 Query 49843 ATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTT 49902 | ||| | | || | || | |||| | ||| || |||||| | ||| |||||| Sbjct 32318 AAAAGATCACAGGGTAAAGACTCAGTCAAAAACTCAATTTCAATAGCTACAGCATCTCGA 32259 Query 49903 ATAATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAAC 49960 ||||| | | || ||||||| || || | |||| ||||||| |||| | || Sbjct 32258 ATAATTTGTTTTACTCGTTCTTCAGAAGGCTTGTTTACAAT--ATGTTTATACATAAGAC 32201 Query 49961 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTC 50020 |||| || || || || | |||||| |||||||| || | ||| || || || || | || Sbjct 32200 ATGCAAAGTCACAATGTAAACCCTCATCTCTACTGATCAATTCATTTGAGAAAGTTACTC 32141 Query 50021 CGGG 50024 | || Sbjct 32140 CAGG 32137 Score = 89.7 bits (98), Expect = 7e-13 Identities = 141/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 50347 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGT 50406 |||||||| || ||||| || || || ||||| || || | ||||| ||||||| Sbjct 31317 TTTTCATTAACAATTCCATCGCTAGCAGCAAAGAATGCAAGAACATGAGAGATAAAATAC 31258 Query 50407 TTTTCGTTGGGTGTTAG--TTTATTCC-AATCATTGATATCTTTAGATATATCTACTTCT 50463 ||||| | || | || ||| |||| ||| | ||| || | ||| |||||| Sbjct 31257 TTTTCCTGAGGCTTCAGCTTTTCTTCCCAATGAACTGCATCAGCAGCCAAATCAACTTCT 31198 Query 50464 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 50523 || ||||||||||| || || || || | || ||||| ||||| || || | |||||| Sbjct 31197 TCAACTGTCCAAAACGAGGCTTCAGCTTGCTTGTACATTTTCCATATATCTTTATATTGA 31138 Query 50524 ATTGGGAAAATAACAAATCT 50543 ||||| || | |||||| || Sbjct 31137 ATTGGAAATAAAACAAACCT 31118 >seq4963 Length=54722 Score = 132 bits (146), Expect = 7e-26 Identities = 220/315 (70%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 ||||| || || || ||| ||| || || | ||||||| |||| | |||||| | || Sbjct 22410 AGACCAATGCCACCAGCCCATTTTGAAATAATTGCGCATTGTTTAACAGTATCAAAAATT 22469 Query 80275 CCCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 80333 || || || |||||| ||| | ||| || ||||||||| ||||| || | | Sbjct 22470 CCTTCAATACTATCACTCTGCATAGCTAA-TAAAAAACAGCTTGACATCTGAGGTCTGGG 22528 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 || || | ||| ||||| |||||||| || || |||||||||||||| |||| || ||| Sbjct 22529 GGTGCCAGAATTGAATAATGTAGGAGAGGCATGAGTAAACCATTTTTCTGACATTAAATT 22588 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || || ||||| | || | ||| ||| || || || | || | ||| || Sbjct 22589 ATATGTTTCTATAGCAGCATCAAGATCTTCACCATGTATACCAACAGATACTCTCATCAA 22648 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||| ||||| || ||| | | || ||| ||||| | ||| |||||| |||| | Sbjct 22649 CATGTGTTGAGGCCTCTCAGCAGTTTTACCATTAATTTTTAGCAAATAAGATCTTTCAAG 22708 Query 80514 AGTTTTAAAACCAAA 80528 ||| | || | |||| Sbjct 22709 AGTCTAAATATCAAA 22723 Score = 125 bits (138), Expect = 1e-23 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 79996 TGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 80055 |||||||| || || ||||| ||||| | || | || | |||||||||| |||||| Sbjct 22086 TGCTCCTCTTTACCAGTATTTTTTTTTAAGTCTAAAAAGTCTATAATATCAGCATGCCAA 22145 Query 80056 GGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTA 80115 || || ||||| ||||| || || ||||| ||||| ||||||||||| | ||||| Sbjct 22146 GGCTCTAAGTAGATGGCAATTGAGCCTGGTCGCTTGTTACCTCCCTGATCAACATATCTT 22205 Query 80116 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTC 80172 || || |||||| | ||||| ||||| ||||| || ||||| || |||||| ||| Sbjct 22206 GCAGTATTATTAAATACTCTTAACATGGGAATTATTCCATTCGAATGACCATTTGTC 22262 Score = 123 bits (136), Expect = 4e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 79053 ATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGG 79112 |||||| ||||||||||||||||| | ||||| | || |||||||| | || ||||| Sbjct 15781 ATTAACAACTTGAAATTCTCCAGAAAGCACTCTTCTAGAATAAATATTGTTAGTGTATGG 15840 Query 79113 TTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCAC 79172 ||| | |||||||| || || | ||||||||| || || || ||||||||||| || || Sbjct 15841 TTCAATTGATTCATTGTTGCCAAGAATTTGAGCTGTAGAGGCTGTTGGCATAGGAGCAAC 15900 Query 79173 CAATAAACTATTTCTAAGACC 79193 |||||||| |||| || ||| Sbjct 15901 TAATAAACTGTTTCGAACACC 15921 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 79249 ACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCA 79308 |||||||| | ||||||||| || || || |||||| ||| ||| ||| | ||| Sbjct 16106 ACATTCCACATATCATATTGAAGTATTCCTTTACTAATAGGTGACCCTTGGTAACTCTCA 16165 Query 79309 TAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTT 79368 |||| || || ||||| |||||||||||| || |||||||| || |||||||| ||| Sbjct 16166 TAAGTCCCATCTTTTTCAGCTAATTCACAAGATGCTTCTAATGCACCATAATAAATTGTT 16225 Query 79369 TCGAAAATCTTCTTATTGAG 79388 || ||||||| ||||| || Sbjct 16226 TCAAAAATCTGTTTATTAAG 16245 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 79444 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGA 79503 ||| | |||||||||||||| ||||||||||| ||| | || ||| || ||| || ||| Sbjct 20219 AATACCTGAACACCAATACCTATAGGTCTATGCCTCATGTTTGAATTTCGAGCCTCAGGA 20278 Query 79504 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACA 79563 | || ||| | || |||||||| ||||| ||||| || ||| |||||| ||| Sbjct 20279 ACTGGGTAAAAGTTTCGATCTATAACCTTATTTAGATTTCTTGTTATCACTTTGGTGACA 20338 Query 79564 TCCTTTAGTTTGAGAAAATCA 79584 | ||||| ||| ||||||| Sbjct 20339 TACTTTAATTTCTTAAAATCA 20359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718081008622240