Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2421 159 3e-34 >seq2421 Length=99546 Score = 159 bits (176), Expect = 3e-34 Identities = 205/280 (73%), Gaps = 7/280 (3%) Strand=Plus/Minus Query 13949 tttttttAA-CCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAG 14007 ||||||||| ||||||||| || ||||| || || ||||| || ||||| || ||||||| Sbjct 31726 TTTTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCAG 31667 Query 14008 CAAACGCTATTAATCGTTCTCCAAACGATGCT---TTTTTGTTCGATATCCATTTTCTAG 14064 |||| || | | ||||| || || || | |||||| ||||||||| | Sbjct 31666 CAAATGCAACAACACGTTCAGAGAAAGAAGCACAATCTTTGTTA---ATCCATTTTAGTG 31610 Query 14065 CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCT 14124 |||| | | |||||||| || | | ||| |||||||| ||||||||||||| | || Sbjct 31609 CCCAAACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAAATAAATTTGACT 31550 Query 14125 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 | ||| | | | | |||| |||||||| ||||| ||||||||| ||||| |||| Sbjct 31549 TTTCTATCGGATCTTTAATGAGAGTATCAATGAGTAAAGAATACATTTCTGAGTGGATGT 31490 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 |||| || || || ||||| |||||||| ||| ||||| Sbjct 31489 TTTCAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTC 31450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479602575114400