Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2421 159 3e-34 >seq2421 Length=99546 Score = 159 bits (176), Expect = 3e-34 Identities = 206/282 (73%), Gaps = 7/282 (2%) Strand=Plus/Minus Query 13737 tttttttAA-CCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAG 13795 ||||||||| ||||||||| || || || ||||| ||||| || ||||| || ||||||| Sbjct 31726 TTTTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCAG 31667 Query 13796 CAAACGCTATTAGTCGTTCTCCAAACGATGC---TTTTTTGTTTGATATCCATTTTCTAG 13852 |||| || | | ||||| || || || | |||||| ||||||||| | Sbjct 31666 CAAATGCAACAACACGTTCAGAGAAAGAAGCACAATCTTTGTT---AATCCATTTTAGTG 31610 Query 13853 CCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCT 13912 |||| | | |||||||| || | | ||| ||||| |||||||| ||||||| | || Sbjct 31609 CCCAAACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAAATAAATTTGACT 31550 Query 13913 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 13972 | ||| | | | | |||| |||||||| ||||| ||||||||| ||||| |||| Sbjct 31549 TTTCTATCGGATCTTTAATGAGAGTATCAATGAGTAAAGAATACATTTCTGAGTGGATGT 31490 Query 13973 TTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 |||| || || || ||||| |||||||| ||| ||||||| Sbjct 31489 TTTCAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTCTG 31448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478463672958240