Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq266 93.3 3e-14 seq24 93.3 3e-14 seq12660 82.4 6e-11 >seq266 Length=263831 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 42906 ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTG 42965 ||||| ||| ||| ||||| | || ||||| || ||| | | || || || || Sbjct 46263 ATGGAGAGTAGACTCTTTTTGAATGTTATAATCACTCAGTGTTCTGCCATCTTCTAACTG 46322 Query 42966 TTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAA 43025 ||| || ||||||||||| || |||||||| | || | ||||||||| || ||| Sbjct 46323 TTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTT 46382 Query 43026 CTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 |||| || || ||| || || ||| ||||| || | || || ||||| || || Sbjct 46383 AGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTTGCCAGT 46442 Query 43086 TAGAGTTTTCACAAAAATTTGCAT 43109 || |||||| ||||| |||||||| Sbjct 46443 TAAAGTTTTAACAAATATTTGCAT 46466 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| ||||| | || |||||| || || | | || || || ||||| || ||||| Sbjct 46503 CTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAA 46562 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||||| || |||||||| | || | ||||||||| || ||| |||| || | Sbjct 46563 AATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCTTTCACATT 46622 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | ||| || || ||| ||||| || | || || ||||| || |||| |||||| || Sbjct 46623 GTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAAC 46682 Query 43098 AAAAATTTGCAT 43109 || |||||||| Sbjct 46683 GAATATTTGCAT 46694 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| ||||| | || |||||| || || | | || || || ||||| || ||||| Sbjct 46731 CTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAA 46790 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||||| || |||||||| | || | ||||||||| || ||| |||| || | Sbjct 46791 AATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTCACATT 46850 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | ||| || || ||| || || || | || || ||||| || |||| |||||| || Sbjct 46851 GTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAAC 46910 Query 43098 AAAAATTTGCAT 43109 ||| |||||||| Sbjct 46911 AAATATTTGCAT 46922 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| ||||| | || |||||| || || | | || || || ||||| || ||||| Sbjct 46959 CTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAA 47018 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||||| || |||||||| | || | ||||||||| || ||| |||| || | Sbjct 47019 AATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTCACATT 47078 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | ||| || || ||| || || || | || || ||||| || |||| |||||| || Sbjct 47079 GTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAAC 47138 Query 43098 AAAAATTTGCAT 43109 ||| |||||||| Sbjct 47139 AAATATTTGCAT 47150 >seq24 Length=448628 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||| || ||||| | | || || ||||| || || |||||| Sbjct 62349 TCTTTTTGAATATTGTAGTCACTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAA 62290 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || || ||||||||||| | || | ||||||||| || || |||| || || Sbjct 62289 ATTAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTG 62230 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || || ||| || || |||| ||| || ||||| || || || ||||||||| Sbjct 62229 TCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACA 62170 Query 43099 AAAATTTGCAT 43109 || |||||||| Sbjct 62169 AATATTTGCAT 62159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||||| ||||| | | || || ||||| || || |||||| Sbjct 62121 TCTTTTTGAATGTTGTAATCACTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAA 62062 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || || |||||||| || | || | |||||| || || || |||| || || Sbjct 62061 ATTAAACGCTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGAATTTTAGCTTTTACGTTG 62002 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || || ||| || || |||| ||| || ||||| || || || ||||||||| Sbjct 62001 TCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACA 61942 Query 43099 AAAATTTGCAT 43109 || |||||||| Sbjct 61941 AATATTTGCAT 61931 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||| || ||||| | | || || ||||| || || |||||| Sbjct 62577 TCTTTTTGAATATTGTAGTCACTTAATGTTCTACCATCTTCTAATTGCTTACCAGCAAAA 62518 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || || ||||||||||| | || | ||||||||| || || |||| || || Sbjct 62517 ATTAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTG 62458 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || || ||| || || |||| || || ||||| || || || ||||| ||| Sbjct 62457 TCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACA 62398 Query 43099 AAAATTTGCAT 43109 || |||||||| Sbjct 62397 AATATTTGCAT 62387 >seq12660 Length=10627 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 42975 AAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGAC 43034 |||||| || ||||||||||| | || ||||||||||| |||| || |||| || Sbjct 9613 AAAAATTAAACGCTGTTGATCTGGTGGAACACCTTCTTTGTCGCAAATTTTAGCTTTTAC 9672 Query 43035 TCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTT 43094 | | ||| ||| | ||| || || |||| ||| | ||||| || || || ||||| Sbjct 9673 TTCGTCAATTGTATTAGCAGGTTCAACCTCTAACGTGAAGGTTTTACCAGTAAGGGTTTT 9732 Query 43095 CACAAAAATTTGCAT 43109 |||||| |||||||| Sbjct 9733 CACAAATATTTGCAT 9747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381272383645128