Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2421 143 4e-29 seq4963 138 2e-27 >seq2421 Length=99546 Score = 143 bits (158), Expect = 4e-29 Identities = 210/293 (72%), Gaps = 7/293 (2%) Strand=Plus/Minus Query 42143 TTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCA 42202 ||||||||||||||||||| ||||| ||||| ||||| || |||||||| ||||| ||| Sbjct 31724 TTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCAGCA 31665 Query 42203 AAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT-GT--ATCCACTTTTGAGCCCAA 42259 || |||| || | || || |||| || | || ||||| ||| | |||||| Sbjct 31664 AATGCAACAACACGTTCAGAGAAAGAAGCACAATCTTTGTTAATCCATTTTAGTGCCCAA 31605 Query 42260 TCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCA 42319 | || || |||| ||||| ||||| ||||| || |||||||| | || ||||| Sbjct 31604 ACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAAATAAATTTGACTTTTCT 31545 Query 42320 TTACTATCTTTAACATATGTATCGATCA--AAAGACTATACATTTCTGAATGAATGTTTT 42377 | |||||||| ||||| || | ||||| |||||||||||| || ||||||| Sbjct 31544 ATCGGATCTTTAATGAGAGTATCAATGAGTAAAGA--ATACATTTCTGAGTGGATGTTTT 31487 Query 42378 CAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 |||| || || ||||| || || || ||| || || | | || |||||| Sbjct 31486 CAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTCTGGTAGTTGAACTTCT 31434 Score = 111 bits (122), Expect = 2e-19 Identities = 173/244 (71%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 41891 ATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCA---TTTCACAATTCATTCCT 41947 || |||||||| || ||||| |||||||||||||| | ||| | ||||||||| Sbjct 32375 ATTAATCTATCAGCACAAAATTCAATATATGTTTTCATAAGACTTTTA---TTCATTCCT 32319 Query 41948 ATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTT 42007 | ||| | | || | || | |||| | ||| || |||||||| || || ||| Sbjct 32318 AAAAGATCACAGGGTAAAGACTCAGTCAAAAACTCAATTTCAATAGCTACAGCATCTCGA 32259 Query 42008 ATAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAAC 42065 ||||| | ||||| ||||||| || || ||||||| |||||| |||| | || Sbjct 32258 ATAATTTGTTTTACTCGTTCTTCAGAAGGCTTGTTTACAATA--TGTTTATACATAAGAC 32201 Query 42066 ATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 42125 |||| || || || || | ||||||||||||||| || ||||| || || || || | || Sbjct 32200 ATGCAAAGTCACAATGTAAACCCTCATCTCTACTGATCAATTCATTTGAGAAAGTTACTC 32141 Query 42126 CGGG 42129 | || Sbjct 32140 CAGG 32137 Score = 93.3 bits (102), Expect = 6e-14 Identities = 142/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 42452 TTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 42511 ||||| || || ||||| || || || ||||| || || | ||||| |||||||| Sbjct 31317 TTTTCATTAACAATTCCATCGCTAGCAGCAAAGAATGCAAGAACATGAGAGATAAAATAC 31258 Query 42512 TTTTCGTCCGGTGTTAA--TTTATTCC-AATCATTGATATCTTTAGATATATCTACTTCT 42568 ||||| | || | | ||| |||| ||| | ||| || | ||| |||||| Sbjct 31257 TTTTCCTGAGGCTTCAGCTTTTCTTCCCAATGAACTGCATCAGCAGCCAAATCAACTTCT 31198 Query 42569 TCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGA 42628 || || |||||||| || ||||| || | || ||||| ||||| ||||| | ||||||| Sbjct 31197 TCAACTGTCCAAAACGAGGCTTCAGCTTGCTTGTACATTTTCCATATATCTTTATATTGA 31138 Query 42629 ATTGGGAAAATAACAAATCT 42648 ||||| || | |||||| || Sbjct 31137 ATTGGAAATAAAACAAACCT 31118 >seq4963 Length=54722 Score = 138 bits (152), Expect = 2e-27 Identities = 221/315 (70%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 ||||| || || || ||| ||| || || | ||||||| |||| | |||||| | || Sbjct 22410 AGACCAATGCCACCAGCCCATTTTGAAATAATTGCGCATTGTTTAACAGTATCAAAAATT 22469 Query 72358 CCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416 || || ||||||||| | ||| | ||| || ||||||||| ||||| || | | Sbjct 22470 CCTTCAATACTATCACTCTGCATAGCTAA-TAAAAAACAGCTTGACATCTGAGGTCTGGG 22528 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 || || | ||| ||||| |||||||| || || |||||||||||||| |||| || ||| Sbjct 22529 GGTGCCAGAATTGAATAATGTAGGAGAGGCATGAGTAAACCATTTTTCTGACATTAAATT 22588 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || || ||||| | || | ||| |||||| || || | || | ||| || Sbjct 22589 ATATGTTTCTATAGCAGCATCAAGATCTTCACCATGTATACCAACAGATACTCTCATCAA 22648 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| || ||||| || ||| | | || ||| ||||| | ||| || ||| |||| | Sbjct 22649 CATGTGTTGAGGCCTCTCAGCAGTTTTACCATTAATTTTTAGCAAATAAGATCTTTCAAG 22708 Query 72597 AGTTTTAAAACCAAA 72611 ||| | || | |||| Sbjct 22709 AGTCTAAATATCAAA 22723 Score = 122 bits (134), Expect = 1e-22 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 72079 TGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 72138 |||||||| || || ||||| ||||| | || | || | |||||||||| |||||| Sbjct 22086 TGCTCCTCTTTACCAGTATTTTTTTTTAAGTCTAAAAAGTCTATAATATCAGCATGCCAA 22145 Query 72139 GGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 72198 || || ||||| ||||| || || || || ||||| ||||||||||| | ||||| Sbjct 22146 GGCTCTAAGTAGATGGCAATTGAGCCTGGTCGCTTGTTACCTCCCTGATCAACATATCTT 22205 Query 72199 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTC 72255 || || |||||| | ||||| ||||| ||||| || ||||| || |||||| ||| Sbjct 22206 GCAGTATTATTAAATACTCTTAACATGGGAATTATTCCATTCGAATGACCATTTGTC 22262 Score = 116 bits (128), Expect = 5e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 71136 ATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGG 71195 |||||| ||||||||||||||||| | ||||| | || |||||||| | || || || Sbjct 15781 ATTAACAACTTGAAATTCTCCAGAAAGCACTCTTCTAGAATAAATATTGTTAGTGTATGG 15840 Query 71196 TTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 71255 ||| | ||| ||||| || || | ||||||||| || || || || |||||||| || || Sbjct 15841 TTCAATTGATTCATTGTTGCCAAGAATTTGAGCTGTAGAGGCTGTTGGCATAGGAGCAAC 15900 Query 71256 CAATAGACTATTTCTAAGACCATG 71279 |||| ||| |||| || |||||| Sbjct 15901 TAATAAACTGTTTCGAACACCATG 15924 Score = 111 bits (122), Expect = 2e-19 Identities = 190/276 (69%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 71793 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTC 71852 || ||||||||| ||| | || || ||| |||||||| || | || || ||||| || Sbjct 21392 TTTTTGATTACTTTTTCTATTGCAACTATCTTTATAAAGCATGTAAGGGGTTCCAGTCTC 21451 Query 71853 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCT 71912 |||| ||||||| |||||| ||| | | |||| ||| || | |||| Sbjct 21452 TGTCTGGGATTCTAAAATCGCAAACCACAACTTTTGAGCTGGAATTTGTTTTCTATATCG 21511 Query 71913 CTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAA 71972 | ||| ||||| |||| ||| || |||||| || || || || | |||| Sbjct 21512 CCCTTCGCTTTCATATTTCTGATACAACTCTTCGAATTCTTCCCCATAACAGTCAGCTAA 21571 Query 71973 TCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCAT 72032 ||||||||||||| |||||||| ||||||||| || | || | ||||| | |||| Sbjct 21572 ACCAGGACATTCATGAGGACACATTAATGACCACATACCTTTCTCTTCTACTCTTCTCAT 21631 Query 72033 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 72068 ||| || || |||| ||||||| | | ||| | ||| Sbjct 21632 AAATAGGTCGGGAACCCAAAGACCAAAAAACAAATC 21667 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||||||| ||| |||||||| || |||| || || | || ||||| || || || | Sbjct 23684 CACTAAATTTTTTCTTTGTTTCTTTATGTAAGTTAGAAATAGCAATTCTTGCTGCAAGTA 23743 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||||||||||||||| ||||| | || |||| |||||| || |||||||| | Sbjct 23744 AAGCATAATCTGGATGTTTAGTAGTCATTGAAGCAGCTACTTCTGCGGCAAGAGTGTCTA 23803 Query 72881 ATTCTACCGTTGTTACTCC 72899 ||||| || || | ||| Sbjct 23804 GCTCTACAGTGGTAATTCC 23822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670963730656160