Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq24 129 6e-25 seq266 127 2e-24 seq12660 93.3 4e-14 seq4963 86.0 6e-12 >seq24 Length=448628 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| || | ||| | ||||| || ||||||||||| || ||||| || || Sbjct 62613 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTT 62554 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | ||| ||||||||| | || | ||| || ||||| || || Sbjct 62553 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGA 62494 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| ||||| | || | ||| || | ||||| || Sbjct 62493 ATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACC 62434 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | || || || || | |||||||| |||||||||||| || Sbjct 62433 TCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCATACCT 62383 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| || | ||| | ||||| || ||||||||||| ||||||||||| || Sbjct 62157 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTT 62098 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | ||| ||||||||| | || | ||| || || || || || Sbjct 62097 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGA 62038 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||||| | || | ||| || | ||||| || Sbjct 62037 ATACCTTCCTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACC 61978 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | || || || || | ||||| || |||||||||||| || Sbjct 61977 TCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCATACCT 61927 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| || | ||| | ||||| || ||||||||||| || ||||| || || Sbjct 62385 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTT 62326 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | ||| ||||||||| | || | ||| || ||||| || || Sbjct 62325 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGA 62266 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| ||||| | || | ||| || | ||||| || Sbjct 62265 ATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACC 62206 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | || || || || | ||||| || |||||||||||| || Sbjct 62205 TCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCATACCT 62155 Score = 116 bits (128), Expect = 4e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| || || | || | ||||| |||||||||||||| |||||||| || || Sbjct 62842 GCCACCTCTCAATCGAAGGACAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCACT 62783 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || ||| || || | ||| ||||||||| | || | ||| ||||| || || || Sbjct 62782 GAGAGTTCTCCCATCCTCTAATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGG 62723 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| |||||| ||||| | || | ||| || | ||||| || Sbjct 62722 AATACCTTCCTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAAC 62663 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | || || || || | |||||||| |||||||||||| || Sbjct 62662 CTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCATACCT 62611 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| || | ||| | ||||| || ||||||||||| ||||||||||| || Sbjct 61929 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTT 61870 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | || || |||||| |||| | |||||| ||||| || || Sbjct 61869 AATGTTCTACCATCTTCTAACTGCTTGCCAGCAAAGATTAAACGTTGTTGATCTGGCGGA 61810 Query 143078 ATGCCT 143083 || ||| Sbjct 61809 ATACCT 61804 >seq266 Length=263831 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| || | ||||| ||| | ||||| |||||||| ||||| ||||| ||| Sbjct 46240 CCCCCTCTTAATCGAAGAACTAGATGGAGAGTAGACTCTTTTTGAATGTTATAATCACTC 46299 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | |||||||||||| | |||| |||||| ||||| || || Sbjct 46300 AGTGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 46359 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| ||| | | || | || || | ||||| || Sbjct 46360 ATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACC 46419 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || ||||| || || ||||| || |||||||||||| Sbjct 46420 TCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCATA 46467 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || || | ||| | |||| || || |||||||| ||||| ||||||||| Sbjct 46468 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTC 46527 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | |||||||||||| | |||| |||||| ||||| || || Sbjct 46528 AGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 46587 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| ||| | | || | || || | ||||| || Sbjct 46588 ATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACC 46647 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || ||||| || || ||||| ||||||||||||||| Sbjct 46648 TCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACGAATATTTGCATA 46695 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || || | ||| | |||| || || |||||||| ||||| ||||||||| Sbjct 46696 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTC 46755 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | |||||||||||| | |||| |||||| ||||| || || Sbjct 46756 AGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 46815 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| ||| | | || | || || | ||||| || Sbjct 46816 ATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACC 46875 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || ||||| || || ||||| || |||||||||||| Sbjct 46876 TCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCATA 46923 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || || | ||| | |||| || || |||||||| ||||| ||||||||| Sbjct 46924 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTC 46983 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | |||||||||||| | |||| |||||| ||||| || || Sbjct 46984 AGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 47043 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| ||| | | || | || || | ||||| || Sbjct 47044 ATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAACC 47103 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || ||||| || || ||||| || |||||||||||| Sbjct 47104 TCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCATA 47151 >seq12660 Length=10627 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| || | ||| | ||||| |||||||||||||| | ||||| | || Sbjct 9749 CCTCCTCTTAATCGAAGAACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAACTT 9808 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | || ||||||||| | || | ||| || || || || Sbjct 9809 AATGTTCTATCATCTTCTAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTAAA 9868 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 | ||||||||||| |||||| ||||| | ||| | || || | ||||| ||| Sbjct 9869 AAACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTTTCAATTGTATCAGCAGGTTCAACT 9928 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | || || || || | ||||| || ||||||| |||| || Sbjct 9929 TCTAATGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTTCATATCT 9979 >seq4963 Length=54722 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 157333 AGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAA 157392 |||||| || | |||||||||||||||||| ||||| || ||||| || | | ||||||| Sbjct 21575 AGGACATTCATGAGGACACATTAATGACCACATACCTTTCTCTTCTACTCTTCTCATAAA 21634 Query 157393 TATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCT 157432 || ||||||||||| | | | | ||||||||| ||| Sbjct 21635 TAGGTCGGGAACCCAAAGACCAAAAAACAAATCACGAGCT 21674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506881841085120