Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq24 174 1e-38 seq266 172 4e-38 seq12660 132 3e-26 >seq24 Length=448628 Score = 174 bits (192), Expect = 1e-38 Identities = 180/233 (77%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 15133 TCTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC 15192 || |||||||||||||| | || | ||||||||| || |||||||| |||||||| || Sbjct 62845 TCAGCCACCTCTCAATCGAAGGACAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTC 62786 Query 15193 GCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTT 15252 || ||| ||||| | || |||||||| || ||||| | || ||||| || ||||| Sbjct 62785 ACTGAGAGTTCTCCCATCCTCTAATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGG 62726 Query 15253 TGGAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTT 15311 |||||| ||||| ||||| |||||| ||| ||||| | || || ||||| | || Sbjct 62725 TGGAATACCTTCCTTGTCTTGAATTTTAGCT-TTTACGTTGTCAATCGTATCAGCAGGTT 62667 Query 15312 CTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || ||||| || ||||||||||| || || ||||||||||| ||||||||| Sbjct 62666 CAACCTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCATA 62614 Score = 172 bits (190), Expect = 4e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||| | ||| | |||||||||||| |||||||| ||||||||||| ||| Sbjct 62157 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTT 62098 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||||||||| || ||||| | || ||||| |||||||| |||| Sbjct 62097 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGA 62038 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| |||||| ||| ||||| | || || ||||| | ||| || Sbjct 62037 ATACCTTCCTTGTCTTGAATTTTAGCT-TTTACGTTGTCAATCGTATCAGCAGGTTCAAC 61979 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || ||||||||||| || || ||||| ||||| ||||||||| Sbjct 61978 CTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCATA 61930 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||| | ||| | |||||||||||| |||||||| || ||||| || ||| Sbjct 62613 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTT 62554 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||||||||| || ||||| | || ||||| ||||| || |||| Sbjct 62553 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGA 62494 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| |||||| ||| ||||| | || || ||||| | ||| || Sbjct 62493 ATACCTTCTTTGTCTTGAATTTTAGCT-TTTACGTTGTCAATCGTATCAGCAGGTTCAAC 62435 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || ||||||||||| || || ||||||||||| ||||||||| Sbjct 62434 CTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCATA 62386 Score = 163 bits (180), Expect = 2e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||| | ||| | |||||||||||| |||||||| || ||||| || ||| Sbjct 62385 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTT 62326 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||||||||| || ||||| | || ||||| ||||| || |||| Sbjct 62325 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGA 62266 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| |||||| ||| ||||| | || || ||||| | ||| || Sbjct 62265 ATACCTTCTTTGTCTTGAATTTTAGCT-TTTACGTTGTCAATCGTATCAGCAGGTTCAAC 62207 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || ||||||||||| || || ||||| ||||| ||||||||| Sbjct 62206 CTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCATA 62158 Score = 102 bits (112), Expect = 6e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||| | ||| | |||||||||||| |||||||| ||||||||||| ||| Sbjct 61929 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTT 61870 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | |||||||| || |||||||| | || ||||||||||| || ||| Sbjct 61869 AATGTTCTACCATCTTCTAACTGCTTGCCAGCAAAGATTAAACGTTGTTGATCTGGCGGA 61810 Query 15257 ATTCCT 15262 || ||| Sbjct 61809 ATACCT 61804 >seq266 Length=263831 Score = 172 bits (190), Expect = 4e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| | ||| | |||||||| || |||||||| ||||| |||||||| Sbjct 46696 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTC 46755 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | |||||||| ||||| ||||| | |||||||||||||| || |||| Sbjct 46756 AGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 46815 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| ||||| ||| || ||| | || || ||||| | ||| || Sbjct 46816 ATACCTTCTTTGTCTTGGATTTTAGCT-TTCACATTGTCAATAGTATCAGCAGGTTCAAC 46874 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||||||||| || || | |||||| ||||| ||||||||| Sbjct 46875 CTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCATA 46923 Score = 172 bits (190), Expect = 4e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| | ||| | |||||||| || |||||||| ||||| |||||||| Sbjct 46924 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTC 46983 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | |||||||| ||||| ||||| | |||||||||||||| || |||| Sbjct 46984 AGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 47043 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| ||||| ||| || ||| | || || ||||| | ||| || Sbjct 47044 ATACCTTCTTTGTCTTGGATTTTAGCT-TTCACATTGTCAATAGTATCAGCAGGTTCAAC 47102 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||||||||| || || | |||||| ||||| ||||||||| Sbjct 47103 CTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCATA 47151 Score = 158 bits (174), Expect = 9e-34 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| | ||| | |||||||| || |||||||| ||||| |||||||| Sbjct 46468 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTC 46527 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | |||||||| ||||| ||||| | |||||||||||||| || ||| Sbjct 46528 AGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 46587 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| ||||| ||| || ||| | || || ||||| | ||| || Sbjct 46588 ATACCTTCTTTGTCTTGGATTTTAGCT-TTCACATTGTCAATAGTATCAGCAGGTTCGAC 46646 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || |||||||| || || | |||||| || || ||||||||| Sbjct 46647 CTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACGAATATTTGCATA 46695 Score = 149 bits (164), Expect = 5e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||| | ||||| ||| || || || |||||||| ||||| ||||| || Sbjct 46240 CCCCCTCTTAATCGAAGAACTAGATGGAGAGTAGACTCTTTTTGAATGTTATAATCACTC 46299 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | |||||||| ||||| ||||| | |||||||||||||| || ||| Sbjct 46300 AGTGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 46359 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| ||||| ||| || ||| | || || ||||| | ||| || Sbjct 46360 ATACCTTCTTTGTCTTGGATTTTAGCT-TTCACATTGTCAATAGTATCAGCAGGTTCGAC 46418 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || |||||||| || || | |||||| ||||| ||||||||| Sbjct 46419 CTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCATA 46467 Score = 102 bits (112), Expect = 6e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| | ||| | |||||||| || |||||||| ||||| ||||| || Sbjct 47152 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCACTC 47211 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | |||||||| ||||| ||||| | |||||||| |||||||| ||| Sbjct 47212 AGTGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGCTGTTGGTCTGGTGGG 47271 Query 15257 ATTCCT 15262 || ||| Sbjct 47272 ATACCT 47277 >seq12660 Length=10627 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||| | ||| | |||||| || || |||||||| | ||||| | ||| Sbjct 9749 CCTCCTCTTAATCGAAGAACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAACTT 9808 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | |||||||||| || ||||| | || ||||| |||||||| | | Sbjct 9809 AATGTTCTATCATCTTCTAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTAAA 9868 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 | ||||||||||| |||||| ||| ||||| |||| || ||||| | ||| || Sbjct 9869 AAACCTTCTTTGTCTTGAATTTTAGCT-TTTACGTTTTCAATTGTATCAGCAGGTTCAAC 9927 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATAT 15365 ||||| || ||||||||||| || || ||||| ||||| |||| ||||| Sbjct 9928 TTCTAATGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTTCATAT 9977 Score = 122 bits (134), Expect = 6e-23 Identities = 164/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 15140 CCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGA 15199 ||||| |||| | ||| | |||||| || || |||||||| | ||||| | |||| Sbjct 9299 CCTCTTAATCGAAGAACAAGATGAAGAGTAGATTCTTTTTGAACATTGTAGTAACTTAAT 9358 Query 15200 ATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATT 15259 |||| | |||||||||| || ||||| | || ||||| |||||||| | || Sbjct 9359 GTTCTATCATCTTCTAATTCCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTAAAAAA 9418 Query 15260 CCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATC 15318 |||| |||||| |||| ||| ||||| |||| || ||||| | ||| || || Sbjct 9419 CCTTTTTTGTCTTGAATTCGAGCT-TTTACGTTTTCAATTGTATCAGCAAGTTCAACTTC 9477 Query 15319 TAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || ||||||||||| || || ||||| ||||| ||||||||| Sbjct 9478 TAATGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCATA 9523 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 15175 TTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATAT 15234 |||||| || ||||| || || ||| |||| | | |||||| | || ||||| | | Sbjct 9106 TTTTTGAATATTGTAGTCACTGAGAGTTCTTTCATTTTCTAACTCCTTACCAGCAAAAAA 9165 Query 15235 CAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTT 15293 ||||| |||||| || ||||| ||||||||||| |||||| ||| || || | | Sbjct 9166 CAAACTTTGTTGATCTAGTGGAACACCTTCTTTGTCGTGAATTTTAGCT-TTCACGTTGT 9224 Query 15294 CTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15353 | || ||||| | ||| || ||||| || ||||||||||| || || ||||| |||| Sbjct 9225 CAATTGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAA 9284 Query 15354 AAATTTGCATATTT 15367 | || | |||| || Sbjct 9285 ATATATTCATACTT 9298 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/229 (70%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||| | ||| | ||||| || | |||||| | |||| | || ||| Sbjct 9524 CCTCCTCTTAATCGAAGAACAAGTTGAAGAACAGATTTTTTTTGAACGTTGCAGTCACTT 9583 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | || || ||||||||| | | ||| | || ||||| ||||| || |||| Sbjct 9584 AATGTT---GCATCTTCTAATAGAATACCATGAAAAATTAAACGCTGTTGATCTGGTGGA 9640 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 | ||||||||||| |||||||| ||| ||||| || || |||| | ||| || Sbjct 9641 ACACCTTCTTTGTCGCAAATTTTAGCT-TTTACTTCGTCAATTGTATTAGCAGGTTCAAC 9699 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || | ||||||||| || || ||||| ||||| ||||||||| Sbjct 9700 CTCTAACGTGAAGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCATA 9748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362086875541956