Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq266 120 3e-22 seq24 104 2e-17 seq12660 82.4 6e-11 >seq266 Length=263831 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 19978 TTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATC 20037 || ||| |||| ||| | | || | ||| || ||||| |||||||| ||||| ||||| Sbjct 46236 TTATCCCCCTCTTAATCGAAGAACTAGATGGAGAGTAGACTCTTTTTGAATGTTATAATC 46295 Query 20038 GCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGAC 20097 | || ||| | |||||| || ||||| || ||| |||| | | |||||||| Sbjct 46296 ACTCAGTGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGG 46355 Query 20098 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTC 20157 || | ||||||||||| ||||| |||||| | | ||| || ||| ||||||| Sbjct 46356 TGGGATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTC 46415 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || ||||||||||| || || ||||| ||||| |||||||| Sbjct 46416 GACCTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46466 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || |||||||| ||||| ||||||| || ||| | |||||| || ||| Sbjct 46720 TGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGT 46779 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||| | | |||||||| || | ||||||||||| ||||| Sbjct 46780 TTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTA 46839 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 |||||| | | ||| || ||| ||||||| |||| |||||||||||||| || Sbjct 46840 GCTTTCACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTT 46899 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || ||||| ||||| |||||||| Sbjct 46900 AAAGTTTTAACAAATATTTGCAT 46922 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || |||||||| ||||| ||||||| || ||| | |||||| || ||| Sbjct 46948 TGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGT 47007 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||| | | |||||||| || | ||||||||||| ||||| Sbjct 47008 TTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTA 47067 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 |||||| | | ||| || ||| ||||||| |||| |||||||||||||| || Sbjct 47068 GCTTTCACATTGTCAATAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTT 47127 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || ||||| ||||| |||||||| Sbjct 47128 AAAGTTTTAACAAATATTTGCAT 47150 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || |||||||| ||||| ||||||| || ||| | |||||| || ||| Sbjct 46492 TGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGT 46551 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||| | | |||||||| || | ||||||||||| ||||| Sbjct 46552 TTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTA 46611 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 |||||| | | ||| || ||| ||||||| |||| || ||||||||||| || Sbjct 46612 GCTTTCACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTTGCCAGTT 46671 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || ||||| || || |||||||| Sbjct 46672 AAAGTTTTAACGAATATTTGCAT 46694 >seq24 Length=448628 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||| | | || | ||| || || ||||||||||| ||||||||||| | Sbjct 62157 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTT 62098 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || |||||| ||||| || || ||| |||| | | |||||| || || Sbjct 62097 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGA 62038 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| |||||| ||| || | | ||| | ||| ||||||| Sbjct 62037 ATACCTTCCTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACC 61978 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || |||||||| || || | ||||| ||||| |||||||| Sbjct 61977 TCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||| | | || | ||| || || ||||||||||| || ||||| || | Sbjct 62385 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTT 62326 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || |||||| ||||| || || ||| |||| | | ||||||||| || Sbjct 62325 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGA 62266 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| |||||| ||| || | | ||| | ||| ||||||| Sbjct 62265 ATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACC 62206 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || |||||||| || || | ||||| ||||| |||||||| Sbjct 62205 TCTAACGTGATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 62159 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||| | | || | ||| || || ||||||||||| || ||||| || | Sbjct 62613 CCTCCTCTTAATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTT 62554 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || |||||| ||||| || || ||| |||| | | ||||||||| || Sbjct 62553 AATGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGA 62494 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| |||||| ||| || | | ||| | ||| ||||||| Sbjct 62493 ATACCTTCTTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACC 62434 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || |||||||| || || | ||||| ||||| |||||||| Sbjct 62433 TCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62387 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| || |||||||||||||| |||||||| || | | |||| | ||| || ||||| Sbjct 62818 ATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCACTGAGAGTTCTCCCATCCTCTAATTG 62759 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 || || ||| |||| | | ||| || || || | ||||| ||||| |||||| Sbjct 62758 CTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAATTTT 62699 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 ||| || | | ||| | ||| ||||||| || | || |||||||| || || Sbjct 62698 AGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTTTTACCAGT 62639 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 | ||||| ||||| |||||||| Sbjct 62638 AAGGGTTTTTACAAATATTTGCAT 62615 >seq12660 Length=10627 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 20009 AGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTG 20068 || ||| ||| |||||| || ||||| || | | |||| | || ||| || | || Sbjct 9095 AGAGTATATTTTTTTTGAATATTGTAGTCACTGAGAGTTCTTTCATTTTCTAACTCCTTA 9154 Query 20069 CCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGT 20128 || ||| ||| | || |||||||| | || || |||||||||||| |||||| | Sbjct 9155 CCAGCAAAAAACAAACTTTGTTGATCTAGTGGAACACCTTCTTTGTCGTGAATTTTAGCT 9214 Query 20129 TTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAAC 20188 ||||| | | ||| | ||| ||||||| || | || |||||||| || || | Sbjct 9215 TTCACGTTGTCAATTGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTACCAGTAAGG 9274 Query 20189 GTTTTGACAAAAATTTGCAT 20208 ||||| ||||| || | ||| Sbjct 9275 GTTTTCACAAATATATTCAT 9294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419480241453396