Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2421 147 2e-30 >seq2421 Length=99546 Score = 147 bits (162), Expect = 2e-30 Identities = 212/295 (72%), Gaps = 8/295 (3%) Strand=Plus/Minus Query 13228 TTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGC 13287 |||||||| |||||||||||| ||||| || || |||||||| |||||||| ||||| || Sbjct 31725 TTTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCAGC 31666 Query 13288 AAACGCTATCAAC-CTTTCA---CCATACGTACTATTTTTACTCTCTATCCACTTTCTGG 13343 ||| || | |||| | |||| | | | || || || | | ||||| ||| | Sbjct 31665 AAATGC-AACAACACGTTCAGAGAAAGAAGCACAATCTT---TGTTAATCCATTTTAGTG 31610 Query 13344 CCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttt 13403 |||| |||||||| || ||| ||| ||| |||| ||||| |||||||||| | Sbjct 31609 CCCAAACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAAATAAATTTGACT 31550 Query 13404 tttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATAT 13463 |||| | ||| ||| |||||| || | ||| |||||||||||| || || | Sbjct 31549 TTTCTATCGGATCTTTAATGAGAGTATCAATGAGTAAAGAATACATTTCTGAGTGGATGT 31490 Query 13464 TTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 |||| || || ||||| || |||||||| ||| || |||| || |||||||| Sbjct 31489 TTTCAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTCTGGTAGTTGAACTTC 31435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430872536660232