Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq24 95.1 1e-14 >seq24 Length=448628 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| || |||||||||||||||||| ||| || | || || | || Sbjct 62134 ATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTTAATGTTCTACCATCTTCTAATTG 62075 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | ||||||||||||| || || || | || ||||||||| |||||| Sbjct 62074 CTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGAATTTT 62015 Query 48643 CTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 |||| | | | || ||||| | || || ||| | || ||||||||||| | Sbjct 62014 -AGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTACCAG 61956 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT--CGTGTCTTGATCGAAGAA 48744 | || ||||||||||| || ||||| | |||| ||||||||| Sbjct 61955 TAAGGGTTTTCACAAATATTTGCATACCTCCTCTTAATCGAAGAA 61911 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/225 (69%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| || |||||||| ||||| ||| ||| || | || || | || Sbjct 62362 ATGAAGGGTGGATTCTTTTTGAATATTGTAGTCACTTAATGTTCTACCATCTTCTAATTG 62303 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | ||||||||||||| ||||| || | || ||| ||||| |||||| Sbjct 62302 CTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATTTT 62243 Query 48643 CTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 |||| | | | || ||||| | || || ||| | || ||||||||||| | Sbjct 62242 -AGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTACCAG 62184 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT--CGTGTCTTGATCGAAGAA 48744 | || ||||||||||| || ||||| | |||| ||||||||| Sbjct 62183 TAAGGGTTTTCACAAATATTTGCATACCTCCTCTTAATCGAAGAA 62139 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/225 (69%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || || |||||||||||||| ||| | || | | ||||| | || Sbjct 62818 ATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCACTGAGAGTTCTCCCATCCTCTAATTG 62759 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | |||||||||||||||| || || | || ||||||||| |||||| Sbjct 62758 CTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAATTTT 62699 Query 48643 CTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 |||| | | | || ||||| | || || ||| | || ||||||||||| | Sbjct 62698 -AGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTTTTACCAG 62640 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT--CGTGTCTTGATCGAAGAA 48744 | || ||||| ||||| || ||||| | |||| ||||||||| Sbjct 62639 TAAGGGTTTTTACAAATATTTGCATACCTCCTCTTAATCGAAGAA 62595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421143817276916