Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq2702 104 3e-17 seq4436 91.5 2e-13 >seq2702 Length=91333 Score = 104 bits (114), Expect = 3e-17 Identities = 158/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 164551 GGTAAAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAATCG--CGACCCGTTAAAA 164608 || ||||||||||||||||| |||| || |||| | ||| || |||| Sbjct 63370 GGAAAAACATTAATGGCTCGTCAAATTGGGAAAATGCTTAATGCTTCCGAACCA--AAAA 63427 Query 164609 TTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAA 164668 ||||||||||||||||| | || || |||| |||||||||||| ||| ||| | ||| Sbjct 63428 TTGTTAATGGTCCTGAAATTTTAAATAAATTTGTAGGTGAGTCTGAAAAAAATATAAGAG 63487 Query 164669 AGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATG 164728 ||||| | || ||||||| || ||||| ||| || | |||| | | ||| Sbjct 63488 TACTGTTTGAAGATGCTGAAGCTGATCAAAAAAAATATGGAGTTAATAGTCCACTCCATA 63547 Query 164729 TTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGG 164771 | || |||||||||| |||||||| |||| ||| |||| || Sbjct 63548 TGATCATTTTTGATGAAATAGATGCAATTTGTAAACAACGAGG 63590 >seq4436 Length=60862 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 7062 TGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTAT 7121 ||||||||| || | ||| | || | || ||||| ||||||||||| | |||| Sbjct 44559 TGGATTCCATGCTGACATAATCATTCTTCGATCATCAGGATTTGTTTTAA---TTGTATG 44503 Query 7122 AATTATTTG---TAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATA 7178 |||||| || ||| || || |||||||| || ||||| || ||| | | ||| Sbjct 44502 AATTATCTGTGCTAACTGGTCAATACCCTGCCCAGTATAATCAGCATGTTTGTCAACATA 44443 Query 7179 ATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACG 7238 || |||||||| || | ||| ||||| ||||| || || |||||||| || |||| | Sbjct 44442 TTTTGCTCCAAAGTGACGCCACTGAAAACCATATATTGGTCCTAAATCTCCAACTTCTCT 44383 Query 7239 ATGAT-TAAATC 7249 |||| |||||| Sbjct 44382 GTGATGTAAATC 44371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595716209265600