Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4301 93.3 2e-14 seq583 93.3 2e-14 seq84 93.3 2e-14 seq341 91.5 8e-14 seq43 89.7 3e-13 seq1 89.7 3e-13 seq11089 87.8 9e-13 seq2082 87.8 9e-13 seq498 87.8 9e-13 seq50 87.8 9e-13 >seq4301 Length=62667 Score = 93.3 bits (102), Expect = 2e-14 Identities = 83/103 (81%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 11437 AATTAAT---AAAAAAT--CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 ||||||| ||||| | || ||||||| | |||||||||| |||| ||||||| Sbjct 46907 AATTAATTCTAAAAAGTTCCAGATTGGCCAGTATGGGGATCGAACCCACGACATTCGCGT 46848 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 ||||||||||||||||| |||||||||||||| ||||| ||| Sbjct 46847 TATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCCGACGA 46805 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 58551 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 58492 Query 11528 CC 11529 || Sbjct 58491 CC 58490 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||| ||||||||| |||||||||||||| || Sbjct 59451 GGATCGAACCCACGACATTCGCGTTATTAGCGCGACGCTCTAACCAACTGAGCTAACCGG 59510 Query 11528 CC 11529 || Sbjct 59511 CC 59512 >seq583 Length=200889 Score = 93.3 bits (102), Expect = 2e-14 Identities = 80/98 (82%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 11435 AGAATTA-ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||||| |||||| | ||||||| | |||||||||| |||| ||||||||| Sbjct 87796 AGAATTAGATAAAAGTT---ATTGGCCAGTATGGGGATCGAACCCACGACATTCGCGTTA 87852 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||||||||| |||||||||||||| |||||| Sbjct 87853 TTAGCACGACGCTCTAACCAACTGAGCTAACCGGCCGT 87890 >seq84 Length=359210 Score = 93.3 bits (102), Expect = 2e-14 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 11433 ATAGAATTAATAAA--AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 ||| |||||| ||| ||| || |||||| | |||||||||| |||| |||||| Sbjct 299399 ATAAAATTAAAAAACTAAAATAATTTGGCCAGTATGGGGATCGAACCCACGACATTCGCG 299458 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||| |||||||||||||| |||| Sbjct 299459 TTATTAGCACGACGCTCTAACCAACTGAGCTAACCGGCC 299497 >seq341 Length=246054 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||| | |||||||||| |||| |||||||||||||||||||||||| || Sbjct 172916 AAATTGGCCAGTATGGGGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAAC 172975 Query 11512 CAACTGAGCTAATGGGCCG 11530 |||||||||||| ||||| Sbjct 172976 CAACTGAGCTAACCGGCCG 172994 >seq43 Length=399536 Score = 89.7 bits (98), Expect = 3e-13 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 376417 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 376358 Query 11528 CCG 11530 ||| Sbjct 376357 CCG 376355 >seq1 Length=908834 Score = 89.7 bits (98), Expect = 3e-13 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 152307 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 152248 Query 11528 CCG 11530 ||| Sbjct 152247 CCG 152245 >seq11089 Length=15377 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 9900 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 9841 Query 11528 CC 11529 || Sbjct 9840 CC 9839 >seq2082 Length=109617 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 88929 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 88988 Query 11528 CC 11529 || Sbjct 88989 CC 88990 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||| ||||||||||||||||| |||||||||||||| || Sbjct 90313 GGATCGAACCCACGACATTCGCGCTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 90254 Query 11528 CC 11529 || Sbjct 90253 CC 90252 >seq498 Length=213463 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 107840 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 107781 Query 11528 CC 11529 || Sbjct 107780 CC 107779 >seq50 Length=395465 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 158284 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 158343 Query 11528 CC 11529 || Sbjct 158344 CC 158345 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261424542297616