Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq24 145 7e-30 seq266 141 8e-29 seq12660 118 1e-21 seq2327 89.7 5e-13 >seq24 Length=448628 Score = 145 bits (160), Expect = 7e-30 Identities = 194/264 (73%), Gaps = 7/264 (3%) Strand=Plus/Minus Query 94748 TTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAG-T 94805 |||| | ||| ||||||| |||| ||| || |||||||| ||||| || | |||| | Sbjct 62419 TTTACCAGTAAGGGTTTTTACAAATATTTGCATACCTCCTCTTAATCG-AAGAACAAGAT 62361 Query 94806 GCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTG 94863 | | || ||||| ||||| | || || || || || |||| | ||| || | || Sbjct 62360 GAAGGGTGGATTCTTTTTGAATATTGTAGTCACT--TAATGTTCTACCATCTTCTAATTG 62303 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || |||| ||||| | || |||||||| ||||||||||||||||| | |||||| Sbjct 62302 CTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATTTT 62243 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 || || ||| | | | || ||||| | || || || | |||||||||||| ||||| Sbjct 62242 AGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTACCAGT 62183 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 ||| ||||||||||| || ||||| Sbjct 62182 AAGGGTTTTCACAAATATTTGCAT 62159 Score = 140 bits (154), Expect = 3e-28 Identities = 193/264 (73%), Gaps = 7/264 (3%) Strand=Plus/Minus Query 94748 TTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAG-T 94805 |||| | ||| |||||| |||| ||| || |||||||| ||||| || | |||| | Sbjct 62191 TTTACCAGTAAGGGTTTTCACAAATATTTGCATACCTCCTCTTAATCG-AAGAACAAGAT 62133 Query 94806 GCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTG 94863 | | || ||||| ||||| | ||| ||||| || || |||| | ||| || | || Sbjct 62132 GAAGGGTGGATTCTTTTTGAATGTTGTAATCACT--TAATGTTCTACCATCTTCTAATTG 62075 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || |||| ||||| | || || ||||| ||||||||||| ||||| | |||||| Sbjct 62074 CTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGAATTTT 62015 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 || || ||| | | | || ||||| | || || || | |||||||||||| ||||| Sbjct 62014 AGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTACCAGT 61955 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 ||| ||||||||||| || ||||| Sbjct 61954 AAGGGTTTTCACAAATATTTGCAT 61931 Score = 136 bits (150), Expect = 4e-27 Identities = 192/264 (73%), Gaps = 7/264 (3%) Strand=Plus/Minus Query 94748 TTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAG-T 94805 |||| | ||| ||||||| |||| ||| || |||||||| ||||| || | |||| | Sbjct 62647 TTTACCAGTAAGGGTTTTTACAAATATTTGCATACCTCCTCTTAATCG-AAGAACAAGAT 62589 Query 94806 GCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTG 94863 | | || ||||| ||||| | || || || || || |||| | ||| || | || Sbjct 62588 GAAGGGTGGATTCTTTTTGAATATTGTAGTCACT--TAATGTTCTACCATCTTCTAATTG 62531 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || |||| ||||| | || |||||||| ||||||||||||||||| | |||||| Sbjct 62530 CTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATTTT 62471 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 || || ||| | | | || ||||| | || || || | ||||||||||| ||||| Sbjct 62470 AGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAAAGTGATGGTTTTACCAGT 62411 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 ||| ||||| ||||| || ||||| Sbjct 62410 AAGGGTTTTTACAAATATTTGCAT 62387 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||||||| | || | || | |||||||| ||||| | ||| || || || Sbjct 62841 CCACCTCTCAATCGAAGGACAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCACTG 62782 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||| | || || || |||| ||||| | ||||| ||||| ||| Sbjct 62781 AGAGTTCTCCCATCCTCTAATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTGGA 62722 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | |||||| || || ||| | | | || ||||| | || || Sbjct 62721 ATACCTTCCTTGTCTTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACC 62662 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||||| |||||||| ||||| ||||| || ||||| Sbjct 62661 TCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62615 >seq266 Length=263831 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| ||||| ||||| | || | || | |||||| || ||||| | ||||||||| || Sbjct 46239 TCCCCCTCTTAATCGAAGAACTAGATGGAGAGTAGACTCTTTTTGAATGTTATAATCACT 46298 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || || || ||| || | |||||| || |||| || || | ||| |||||||| || Sbjct 46299 CAGTGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 46358 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 |||||||||||||| | ||||| || || || | | | ||| ||||| | ||||| Sbjct 46359 GATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGAC 46418 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||||| ||||| | |||||| ||||| || ||||| Sbjct 46419 CTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46466 Score = 141 bits (156), Expect = 8e-29 Identities = 181/247 (73%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 94764 TTTTAA--AAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || || ||||||||||| | || | ||| | || || || | Sbjct 46448 TTTTAACAAATATTTGCATACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTT 46507 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 |||| | |||||||||||||| || || ||| || | |||||| || |||| || | Sbjct 46508 TTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCA 46567 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 | | ||| |||||||| || |||||||||||||| | ||||| || || || | | | Sbjct 46568 AACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAA 46627 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 ||| ||||| | ||||| || | ||||||||||| ||||| | |||||| || || | Sbjct 46628 TAGTATCAGCAGGTTCGACCTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACGAATA 46687 Query 95001 TCTGCAT 95007 | ||||| Sbjct 46688 TTTGCAT 46694 Score = 141 bits (156), Expect = 8e-29 Identities = 181/247 (73%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 94764 TTTTAA--AAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || || ||||||||||| | || | ||| | || || || | Sbjct 46676 TTTTAACGAATATTTGCATACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTT 46735 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 |||| | |||||||||||||| || || ||| || | |||||| || |||| || | Sbjct 46736 TTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCA 46795 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 | | ||| |||||||| ||||||||||||||||| | ||||| || || || | | | Sbjct 46796 AACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAA 46855 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 ||| ||||| | || || || | || |||||||| ||||| | |||||| ||||| | Sbjct 46856 TAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATA 46915 Query 95001 TCTGCAT 95007 | ||||| Sbjct 46916 TTTGCAT 46922 Score = 141 bits (156), Expect = 8e-29 Identities = 181/247 (73%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 94764 TTTTAA--AAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || || ||||||||||| | || | ||| | || || || | Sbjct 46904 TTTTAACAAATATTTGCATACCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTT 46963 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 |||| | |||||||||||||| || || ||| || | |||||| || |||| || | Sbjct 46964 TTTGAATGTTATAATCGCTCAGGGTTCTGCCATCTTCTAACTGTTTACCAGCAAAAATCA 47023 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 | | ||| |||||||| ||||||||||||||||| | ||||| || || || | | | Sbjct 47024 AACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAA 47083 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 ||| ||||| | || || || | || |||||||| ||||| | |||||| ||||| | Sbjct 47084 TAGTATCAGCAGGTTCAACCTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATA 47143 Query 95001 TCTGCAT 95007 | ||||| Sbjct 47144 TTTGCAT 47150 >seq12660 Length=10627 Score = 118 bits (130), Expect = 1e-21 Identities = 187/262 (71%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 94748 TTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTG 94806 |||| | ||| |||||| |||| ||| || |||||||| ||||| || | ||||| Sbjct 9490 TTTACCAGTAAGGGTTTTCACAAATATTTGCATACCTCCTCTTAATCG-AAGAACAAGTT 9548 Query 94807 CAA-AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTT 94865 || | ||||| ||||| ||||| | || || || ||||| | || || | | Sbjct 9549 GAAGAACAGATTTTTTTTGAACGTTGCAGTCACT--TAATGTTGCA-TCTTCTAATAGAA 9605 Query 94866 TTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTG 94925 | || ||| ||||| | || |||||||| |||| |||||||||||| ||||||| | Sbjct 9606 TACCATGAAAAATTAAACGCTGTTGATCTGGTGGAACACCTTCTTTGTCGCAAATTTTAG 9665 Query 94926 CCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAA 94985 | || || || | | || | ||| | || || || | ||||| |||||| ||||||| Sbjct 9666 CTTTTACTTCGTCAATTGTATTAGCAGGTTCAACCTCTAACGTGAAGGTTTTACCAGTAA 9725 Query 94986 GAGTTTTCACAAAGATCTGCAT 95007 | ||||||||||| || ||||| Sbjct 9726 GGGTTTTCACAAATATTTGCAT 9747 Score = 113 bits (124), Expect = 4e-20 Identities = 187/264 (71%), Gaps = 7/264 (3%) Strand=Plus/Plus Query 94748 TTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAG-T 94805 |||| | ||| |||||| |||| ||| || |||||||| ||||| || | |||| | Sbjct 9715 TTTACCAGTAAGGGTTTTCACAAATATTTGCATACCTCCTCTTAATCG-AAGAACAAGAT 9773 Query 94806 GCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTG 94863 | | ||||||||| ||||| || || || | || || |||| | ||| || | | Sbjct 9774 GAAGAGTAGATTCTTTTTGAACATTGTAGTAACT--TAATGTTCTATCATCTTCTAATTC 9831 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || |||| ||||| | || || ||||| || |||||||||||| | |||||| Sbjct 9832 CTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTAAAAAACCTTCTTTGTCTTGAATTTT 9891 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 || || ||| | | || ||||| | || || || | ||||||||||| ||||| Sbjct 9892 AGCTTTTACGTTTTCAATTGTATCAGCAGGTTCAACTTCTAATGTGATGGTTTTACCAGT 9951 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 ||| ||||||||||| || | ||| Sbjct 9952 AAGGGTTTTCACAAATATTTTCAT 9975 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| | || ||||| |||||| | |||| |||||||||||| | |||||| || || | Sbjct 9159 CAAAAAACAAACTTTGTTGATCTAGTGGAACACCTTCTTTGTCGTGAATTTTAGCTTTCA 9218 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || | | | || ||||| | || || || | |||||||||||| |||||||| |||| Sbjct 9219 CGTTGTCAATTGTATCAGCAGGTTCAACCTCTAACGTGATGGTTTTACCAGTAAGGGTTT 9278 Query 94992 TCACAAAGATCTGCATGCTT 95011 ||||||| || | ||| ||| Sbjct 9279 TCACAAATATATTCATACTT 9298 Score = 95.1 bits (104), Expect = 1e-14 Identities = 183/264 (69%), Gaps = 7/264 (3%) Strand=Plus/Plus Query 94748 TTTATCGCTAACGGTTTTTTAAAATTT-TACACTCCTCCTCTCAATCGCAACACCAAG-T 94805 |||| | ||| |||||| |||| | | || | |||||| ||||| || | |||| | Sbjct 9262 TTTACCAGTAAGGGTTTTCACAAATATATTCATACTTCCTCTTAATCG-AAGAACAAGAT 9320 Query 94806 GCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTG 94863 | | ||||||||| ||||| || || || | || || |||| | ||| || | | Sbjct 9321 GAAGAGTAGATTCTTTTTGAACATTGTAGTAACT--TAATGTTCTATCATCTTCTAATTC 9378 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || |||| ||||| | || || ||||| || ||||| |||||| | |||| Sbjct 9379 CTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTAAAAAACCTTTTTTGTCTTGAATTCG 9438 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 || || ||| | | || ||||| | || || || | ||||||||||| ||||| Sbjct 9439 AGCTTTTACGTTTTCAATTGTATCAGCAAGTTCAACTTCTAATGTGATGGTTTTACCAGT 9498 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 ||| ||||||||||| || ||||| Sbjct 9499 AAGGGTTTTCACAAATATTTGCAT 9522 >seq2327 Length=102395 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 ||||| |||||||| | ||||||||| || | || | ||| || | ||| ||||| Sbjct 34888 GTAGACTCCTTTTGAATGTTATAATCACTTAATGTCCTTCCATCTTCTAACTGCTTTCCA 34947 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | || |||||| ||||| |||||||||||||| || | |||||| || || Sbjct 34948 GCAAAGATAAGTCGTTGCTGGTCTGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTA 35007 Query 94931 AC 94932 || Sbjct 35008 AC 35009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448173994265760