Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4 147 3e-31 seq10911 143 4e-30 seq2394 82.4 1e-11 >seq4 Length=672194 Score = 147 bits (162), Expect = 3e-31 Identities = 180/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||||||| |||| | | || |||||||| ||||| ||||| ||||| ||||| Sbjct 45116 GCCAAGCGTCATCGCAAGATAT-TGCGTGATAACATTCAAGGCATCACAAAGCCCGCTAT 45058 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| ||||| || ||||| ||||||||| |||| || | |||| || |||| Sbjct 45057 ACGTCGTCTTGCTCGCCGAGGTGGTGTCAAGCGTATCTCAGGGCTTATCTACGAGGAGAC 44998 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| |||| |||| | | | || || | || ||| || || || || Sbjct 44997 TCGAGGCGTTCTGAAAGTCTTTTTGGAAAATGTCATTCGCGACGCTGTCACTTACACGGA 44938 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| |||||||| | ||||| || || || | ||||| Sbjct 44937 GCACGCCAAGAGAAAGACTGTTACCGCCATGGATGTTGTCTACGCTTTAAAGAGGCAAGG 44878 Query 16672 CCG 16674 || Sbjct 44877 ACG 44875 >seq10911 Length=16013 Score = 143 bits (158), Expect = 4e-30 Identities = 179/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || |||||||||| ||| | | || |||||||| ||||| ||||| ||||| ||||| Sbjct 444 GCCAAACGTCATCGCAAGATAT-TGCGTGATAACATTCAAGGCATCACAAAGCCCGCTAT 502 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| ||||| || ||||||||||||||| |||| || | |||| || || | Sbjct 503 ACGTCGTCTAGCTCGCCGAGGTGGAGTCAAGCGTATCTCAGGGCTTATCTACGAGGAAAC 562 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | |||| |||| |||| | | | || || | || ||| | || || || Sbjct 563 TCGAGGTGTTCTGAAAGTCTTTTTGGAAAATGTGATTCGCGACGCTGTGACTTACACGGA 622 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| |||||||| | ||||| || || || | ||||| Sbjct 623 GCACGCCAAGAGAAAGACTGTTACCGCCATGGATGTTGTCTACGCCTTAAAGAGGCAAGG 682 Query 16672 CCG 16674 || Sbjct 683 GCG 685 >seq2394 Length=100411 Score = 82.4 bits (90), Expect = 1e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 16437 AGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 ||||||||||| |||| | | || |||||||| ||||| ||||| | ||| ||||| | | Sbjct 60406 AGCGTCATCGCAAGATAT-TGCGTGATAACATGCAAGGCATCACAATGCCCGCTATACAT 60464 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCT 16529 ||||| ||||| | ||||| ||||||||| ||| Sbjct 60465 CGTCTAGCTCGCCAAGGTGGTGTCAAGCGTATCT 60498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79056076354788