Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2421 91.5 2e-13 >seq2421 Length=99546 Score = 91.5 bits (100), Expect = 2e-13 Identities = 198/296 (67%), Gaps = 11/296 (4%) Strand=Plus/Minus Query 21554 TTTTTTAA-CCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGC 21612 |||||||| ||||||||| | ||||| | ||||||||| ||||| || || || ||||| Sbjct 31725 TTTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCAGC 31666 Query 21613 AAATGCAACTAATCGTTCACCGTATGTAG---ATTCTTTATCCAATATCCATTTTTCTGC 21669 ||||||||| | |||||| | | | || | ||||| | ||||||||| ||| Sbjct 31665 AAATGCAACAACACGTTCAGAGAAAGAAGCACAATCTTTGT---TAATCCATTTTAGTGC 31609 Query 21670 CCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTA--AAAGATGAttt 21727 ||| ||| |||| || || ||| || || ||||| || || | ||| ||| || Sbjct 31608 CCAAACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAAATAAATTTGACTT 31549 Query 21728 ttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATA 21787 || | ||| ||| | ||| | ||||||||| || || || Sbjct 31548 TTCT-ATC-GGATCTTTAATGAGAGTATCAATGAGTAAAGAATACATTTCTGAGTGGATG 31491 Query 21788 TTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC 21843 ||||| || || || ||||| || ||||| |||||| |||| |||||| || Sbjct 31490 TTTTCAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTCTGGTAGTTGAACTTC 31435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531761734535840