Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2421 138 1e-27 seq4963 114 2e-20 >seq2421 Length=99546 Score = 138 bits (152), Expect = 1e-27 Identities = 211/294 (72%), Gaps = 9/294 (3%) Strand=Plus/Minus Query 33382 TTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCA 33441 ||||||||||||||||| | || || ||||| ||||| || |||||||| ||||||||| Sbjct 31724 TTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCAGCA 31665 Query 33442 AAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT-GT--ATCCACTTTTGAGCCCAA 33498 || |||| || | || || || | || | || ||||| ||| | |||||| Sbjct 31664 AATGCAACAACACGTTCAGAGAAAGAAGCACAATCTTTGTTAATCCATTTTAGTGCCCAA 31605 Query 33499 TCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCA 33558 | || || |||| ||||| ||||| ||||| || |||||||| | || ||||| Sbjct 31604 ACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAAATAAATTTGACTTTTCT 31545 Query 33559 TTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTT 33616 | |||||||| |||||| || | ||||| ||||||||| || || ||||||| Sbjct 31544 ATCGGATCTTTAATGAGAGTATCAATGAGTAAAGA--ATACATTTCTGAGTGGATGTTTT 31487 Query 33617 CAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGTACTTCT 33669 |||| || || ||||| || || || ||| || || |||| | || |||||| Sbjct 31486 CAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTCTGGTAGT-TGAACTTCT 31434 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 33691 ttttCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 33750 |||||||| || ||||| || || || ||||| || || | ||||| |||||||| Sbjct 31317 TTTTCATTAACAATTCCATCGCTAGCAGCAAAGAATGCAAGAACATGAGAGATAAAATAC 31258 Query 33751 TTTTCGTCTGGTGTTAG--TTTATTCC-AATCATTGATATCTTTAGATATATCTACTTCT 33807 ||||| | || | || ||| |||| ||| | ||| || | ||| |||||| Sbjct 31257 TTTTCCTGAGGCTTCAGCTTTTCTTCCCAATGAACTGCATCAGCAGCCAAATCAACTTCT 31198 Query 33808 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGG 33867 || ||||||||||| || || || || | || ||||| ||||| || || | |||||| Sbjct 31197 TCAACTGTCCAAAACGAGGCTTCAGCTTGCTTGTACATTTTCCATATATCTTTATATTGA 31138 Query 33868 ATTGGGAAAATAACAAATCT 33887 ||||| || | |||||| || Sbjct 31137 ATTGGAAATAAAACAAACCT 31118 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/244 (69%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 33130 ATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCA---TTTCACAATTCATTCCT 33186 || |||||||| || ||||| |||||||||||||| | ||| | ||||||||| Sbjct 32375 ATTAATCTATCAGCACAAAATTCAATATATGTTTTCATAAGACTTTTA---TTCATTCCT 32319 Query 33187 ATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTT 33246 | ||| | | || | || | |||| | ||| || |||||| | ||| |||||| Sbjct 32318 AAAAGATCACAGGGTAAAGACTCAGTCAAAAACTCAATTTCAATAGCTACAGCATCTCGA 32259 Query 33247 ATAATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAAC 33304 ||||| | | || ||||||| || || | |||| ||||||| |||| | || Sbjct 32258 ATAATTTGTTTTACTCGTTCTTCAGAAGGCTTGTTTACAAT--ATGTTTATACATAAGAC 32201 Query 33305 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTC 33364 |||| || || || || | |||||| |||||||| || | ||| || || || || | || Sbjct 32200 ATGCAAAGTCACAATGTAAACCCTCATCTCTACTGATCAATTCATTTGAGAAAGTTACTC 32141 Query 33365 CGGG 33368 | || Sbjct 32140 CAGG 32137 >seq4963 Length=54722 Score = 114 bits (126), Expect = 2e-20 Identities = 216/315 (69%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 ||||| || || || ||| ||| || || | ||||||| |||| | || ||| | || Sbjct 22410 AGACCAATGCCACCAGCCCATTTTGAAATAATTGCGCATTGTTTAACAGTATCAAAAATT 22469 Query 63552 CCCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63610 || || || |||||| ||| | ||| || ||||||||| ||||| || | | Sbjct 22470 CCTTCAATACTATCACTCTGCATAGCTAA-TAAAAAACAGCTTGACATCTGAGGTCTGGG 22528 Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 || || | ||| ||||| |||||||| || || |||||||||||||| || | || ||| Sbjct 22529 GGTGCCAGAATTGAATAATGTAGGAGAGGCATGAGTAAACCATTTTTCTGACATTAAATT 22588 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || || ||||| | || | ||| ||| || || || | || | ||| || Sbjct 22589 ATATGTTTCTATAGCAGCATCAAGATCTTCACCATGTATACCAACAGATACTCTCATCAA 22648 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||| ||||| || ||| | | || || ||||| | ||| || ||| |||| | Sbjct 22649 CATGTGTTGAGGCCTCTCAGCAGTTTTACCATTAATTTTTAGCAAATAAGATCTTTCAAG 22708 Query 63791 AGTTTTAAAACCAAA 63805 ||| | || | |||| Sbjct 22709 AGTCTAAATATCAAA 22723 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 62274 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62333 ||||| || | ||| | |||||| || || || | | || | | | ||| |||| Sbjct 15725 TTCTTCATGTTATCGTCCCATAAGTTAAGATCAGTAAGATCTTTCATTAAATGTTTATTA 15784 Query 62334 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62393 || ||||||||||||||||| | ||||| | || |||||||| | || || ||||| Sbjct 15785 ACAACTTGAAATTCTCCAGAAAGCACTCTTCTAGAATAAATATTGTTAGTGTATGGTTCA 15844 Query 62394 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62453 | || ||||| || || | ||||||||| || || || || |||||||| || || ||| Sbjct 15845 ATTGATTCATTGTTGCCAAGAATTTGAGCTGTAGAGGCTGTTGGCATAGGAGCAACTAAT 15904 Query 62454 AAACTATTTCTAAGACC 62470 ||||| |||| || ||| Sbjct 15905 AAACTGTTTCGAACACC 15921 Score = 111 bits (122), Expect = 2e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 63273 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63332 || ||||| || || ||||| ||||| | || | || | |||||||||| |||||| Sbjct 22086 TGCTCCTCTTTACCAGTATTTTTTTTTAAGTCTAAAAAGTCTATAATATCAGCATGCCAA 22145 Query 63333 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63392 || || ||||| ||||| || || || || ||||| ||||||||||| | ||||| Sbjct 22146 GGCTCTAAGTAGATGGCAATTGAGCCTGGTCGCTTGTTACCTCCCTGATCAACATATCTT 22205 Query 63393 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63448 || || |||||| | ||||| ||||| ||||| || || || || |||||| || Sbjct 22206 GCAGTATTATTAAATACTCTTAACATGGGAATTATTCCATTCGAATGACCATTTGT 22261 Score = 105 bits (116), Expect = 8e-18 Identities = 191/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 62987 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 63046 || ||||||||| ||| | || || ||| |||||||| ||| | || || ||||| || Sbjct 21392 TTTTTGATTACTTTTTCTATTGCAACTATCTTTATAAAGCATGTAAGGGGTTCCAGTCTC 21451 Query 63047 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT 63106 |||| ||||||| |||||| ||| | | |||| ||| | | |||| Sbjct 21452 TGTCTGGGATTCTAAAATCGCAAACCACAACTTTTGAGCTGGAATTTGTTTTCTATATCG 21511 Query 63107 CCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC-A 63165 || ||| ||||| ||| |||||| |||||| || || ||| |||| | | | Sbjct 21512 CCCTTCGCTTTCATATTTCTGATACAACTCTTCGAATTCTTC-CCCATAACAGTCAGCTA 21570 Query 63166 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63225 | ||||||||||||| |||||||| || |||||| || | || | |||| | ||| Sbjct 21571 AACCAGGACATTCATGAGGACACATTAATGACCACATACCTTTCTCTTCTACTCTTCTCA 21630 Query 63226 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 63262 |||| || || |||| ||||||| | | ||| | ||| Sbjct 21631 TAAATAGGTCGGGAACCCAAAGACCAAAAAACAAATC 21667 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC-AGCTTCTGG 62779 ||| | |||||||||||||| ||||||||||| ||| | || || ||||| ||| || || Sbjct 20219 AATACCTGAACACCAATACCTATAGGTCTATGCCTCATGTTTGA-ATTTCGAGCCTCAGG 20277 Query 62780 AATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCAC 62839 || || ||| | || |||||||| ||||| |||||||| || |||||| || Sbjct 20278 AACTGGGTAAAAGTTTCGATCTATAACCTTATTTAGATTTCTTGTTATCACTTTGGTGAC 20337 Query 62840 ATCCTTCAGTTTGAGAAAATCA 62861 || ||| | ||| ||||||| Sbjct 20338 ATACTTTAATTTCTTAAAATCA 20359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622784330454560