Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq266 109 5e-19 >seq266 Length=263831 Score = 109 bits (120), Expect = 5e-19 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| | || || |||||||| || | || || || || Sbjct 46466 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAA-CCTGC 46408 Query 115346 -GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || ||| ||| |||| || ||| ||||| || |||||||| |||| |||| Sbjct 46407 TGATACTATTG-ACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATC 46349 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||| | | |||| ||| || ||||| |||||||||| || ||| || ||||||| Sbjct 46348 AACAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACACTGAGTGATTATA 46289 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAAA 115516 |||||||||||||||||||| | ||| | || | |||| |||| ||| || Sbjct 46288 ACATTCAAAAAGAGTCTACTCTCCATCTAGTTCTTCGATTAAGAGGGGGATAA 46236 Score = 105 bits (116), Expect = 6e-18 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| | || || ||||||||||| | || || || || Sbjct 46922 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAA-CCTGC 46864 Query 115346 -GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || ||| ||| |||| || ||| ||||| || |||||||| | || |||| Sbjct 46863 TGATACTATTG-ACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATC 46805 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||| | | |||| ||| || ||||| |||||||||| || |||| || |||||||| Sbjct 46804 AACAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATA 46745 Query 115464 ACATTCAAAAAGAGTCTAC 115482 |||||||||||||||| || Sbjct 46744 ACATTCAAAAAGAGTCAAC 46726 Score = 105 bits (116), Expect = 6e-18 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| | || || ||||||||||| | || || || || Sbjct 47150 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAA-CCTGC 47092 Query 115346 -GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || ||| ||| |||| || ||| ||||| || |||||||| | || |||| Sbjct 47091 TGATACTATTG-ACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATC 47033 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||| | | |||| ||| || ||||| |||||||||| || |||| || |||||||| Sbjct 47032 AACAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATA 46973 Query 115464 ACATTCAAAAAGAGTCTAC 115482 |||||||||||||||| || Sbjct 46972 ACATTCAAAAAGAGTCAAC 46954 Score = 102 bits (112), Expect = 7e-17 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || || ||||| | || || |||||||| || | || || || || Sbjct 46694 ATGCAAATATTCGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAA-CCTGC 46636 Query 115346 -GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || ||| ||| |||| || ||| ||||| || |||||||| |||| |||| Sbjct 46635 TGATACTATTG-ACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATC 46577 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||| | | |||| ||| || ||||| |||||||||| || |||| || |||||||| Sbjct 46576 AACAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATA 46517 Query 115464 ACATTCAAAAAGAGTCTAC 115482 |||||||||||||||| || Sbjct 46516 ACATTCAAAAAGAGTCAAC 46498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425235573965920