Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq266 111 1e-19 seq24 105 6e-18 >seq266 Length=263831 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| || || || | || | ||| ||||| ||||||||||| ||||||||| Sbjct 46468 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTC 46527 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | || | || |||| ||| || || || | || ||||| || || || || || Sbjct 46528 AGGGTTCTGCCA-TCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 46586 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||||||||| |||||| || | | || | |||||| | | |||| Sbjct 46587 GATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGAC 46646 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| || |||| |||||| ||||| || ||||| Sbjct 46647 CTCCAATGTGATGGTTTTGCCAGTTAAAGTTTTAACGAATATTTGCAT 46694 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| || || || | || | ||| ||||| ||||||||||| ||||||||| Sbjct 46696 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTC 46755 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | || | || |||| ||| || || || | || ||||| || || || || || Sbjct 46756 AGGGTTCTGCCA-TCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 46814 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| |||||| || | | || | |||||| | | || | Sbjct 46815 AATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAAC 46874 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| || |||| |||||| || || || ||||| Sbjct 46875 CTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46922 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| || || || | || | ||| ||||| ||||||||||| ||||||||| Sbjct 46924 CCACCTCTCAATCGAAGAACAAGGTGAAGGGTTGACTCTTTTTGAATGTTATAATCGCTC 46983 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | || | || |||| ||| || || || | || ||||| || || || || || Sbjct 46984 AGGGTTCTGCCA-TCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 47042 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| |||||| || | | || | |||||| | | || | Sbjct 47043 AATACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCAAC 47102 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| || |||| |||||| || || || ||||| Sbjct 47103 CTCCAATGTAATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 47150 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 131017 AAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCA-TGGTGCG 131075 || || || |||| ||| | || ||||| ||||||||||| ||||| |||| || | | Sbjct 46249 AATCGAAGAACTAGATGGAGAGTAGACTCTTTTTGAATGTTATAATCACTCAGTGTTCTG 46308 Query 131076 CGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTC 131135 | | || |||| ||| || || || | || ||||| || || || || ||||| ||||| Sbjct 46309 CCA-TCTTCTAACTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATACCTTC 46367 Query 131136 TTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195 |||||| |||||| || | | || | |||||| | | |||| || | || Sbjct 46368 TTTGTCTTGGATTTTAGCTTTCACATTGTCAATAGTATCAGCAGGTTCGACCTCCAATGT 46427 Query 131196 AACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | |||||| || |||| |||||| || || || ||||| Sbjct 46428 GATGGTTTTGCCAGTTAAAGTTTTAACAAATATTTGCAT 46466 >seq24 Length=448628 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | ||| || || || | ||| | ||| || || |||||||||||||| || | Sbjct 62843 AGCCACCTCTCAATCGAAGGACAAGATGAAGGGTAGATTCTTTTTGAATGTTGTAGTCAC 62784 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | | || | | ||||||| ||||| || || | ||||||||||||||||| || | Sbjct 62783 TGAGAGTTCTCCCATCCTCTAATTGCTTACCAGCAAAAATTAAACGCTGCTGGTCTGGTG 62724 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCG 131184 | || ||||| ||||| ||| ||| || || | | || | ||||| | | || Sbjct 62723 GAATACCTTCCTTGTC-TTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCA 62665 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | || | ||||||||| || || |||||||| || || ||||| Sbjct 62664 ACCTCTAAAGTGATGGTTTTACCAGTAAGGGTTTTTACAAATATTTGCAT 62615 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 131017 AAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGC 131076 || || || || | ||| | ||| || || ||||||||||||||||| || | || | Sbjct 62148 AATCGAAGAACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCACTTAATGTTCTA 62089 Query 131077 GAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCT 131136 || |||| ||||| || || | ||||||||||| ||||| || || || ||||| Sbjct 62088 CCATCTTCTAATTGCTTACCAGCAAAAATTAAACGCTGTTGGTCTGGTGGAATACCTTCC 62029 Query 131137 TTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195 ||||| ||| ||| || || | | || | ||||| | | || | || | || Sbjct 62028 TTGTC-TTGAATTTTAGCTTTTACGTTGTCAATCGTATCAGCAGGTTCAACCTCTAACGT 61970 Query 131196 AACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | ||||||||| || || ||||| || || || ||||| Sbjct 61969 GATGGTTTTACCAGTAAGGGTTTTCACAAATATTTGCAT 61931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471889392253440