Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2421 141 1e-28 seq4963 132 6e-26 >seq2421 Length=99546 Score = 141 bits (156), Expect = 1e-28 Identities = 212/294 (72%), Gaps = 9/294 (3%) Strand=Plus/Minus Query 32739 TTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCA 32798 ||||||||||||||||| | ||||| ||||| ||||| ||||||||||| ||||| ||| Sbjct 31724 TTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCAGCA 31665 Query 32799 AAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT-GT--ATCCACTTTTGAGCCCAA 32855 || |||| || | || || || | || | || ||||| ||| | |||||| Sbjct 31664 AATGCAACAACACGTTCAGAGAAAGAAGCACAATCTTTGTTAATCCATTTTAGTGCCCAA 31605 Query 32856 TCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCA 32915 | || || |||| ||||| ||||| || || || |||||||| | || ||||| Sbjct 31604 ACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAAATAAATTTGACTTTTCT 31545 Query 32916 TTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTT 32973 | |||||||| |||||||| | ||||| ||||||||| || || ||||||| Sbjct 31544 ATCGGATCTTTAATGAGAGTATCAATGAGTAAAGA--ATACATTTCTGAGTGGATGTTTT 31487 Query 32974 CAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTC-GGTAATCTGTACTTCT 33026 |||| || |||||||| || || || ||| || || |||| | || |||||| Sbjct 31486 CAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTCTGGTAGT-TGAACTTCT 31434 Score = 116 bits (128), Expect = 5e-21 Identities = 174/244 (71%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 32487 ATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCA---TTTCACAATTCATTCCT 32543 || |||||||| || |||||| |||||||||||||| | ||| | ||||||||| Sbjct 32375 ATTAATCTATCAGCACAAAATTCAATATATGTTTTCATAAGACTTTTA---TTCATTCCT 32319 Query 32544 ATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTT 32603 | ||| | | || | || | |||| | ||| || |||||||| || || ||| Sbjct 32318 AAAAGATCACAGGGTAAAGACTCAGTCAAAAACTCAATTTCAATAGCTACAGCATCTCGA 32259 Query 32604 ATAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAAC 32661 ||||| | ||||| ||||||| || || |||||| ||||||| |||| | || Sbjct 32258 ATAATTTGTTTTACTCGTTCTTCAGAAGGCTTGTTTACAAT--ATGTTTATACATAAGAC 32201 Query 32662 ATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 32721 |||| || || || |||| |||||| |||||||| || ||||| || || || || | || Sbjct 32200 ATGCAAAGTCACAATGTAAACCCTCATCTCTACTGATCAATTCATTTGAGAAAGTTACTC 32141 Query 32722 CGGG 32725 | || Sbjct 32140 CAGG 32137 Score = 104 bits (114), Expect = 3e-17 Identities = 151/211 (72%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 33048 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 33107 |||||||| || ||||| || || || ||||| || || | ||||| |||||||| Sbjct 31317 TTTTCATTAACAATTCCATCGCTAGCAGCAAAGAATGCAAGAACATGAGAGATAAAATAC 31258 Query 33108 TTTTCGTCTGGTGTTAG--TTTATTCC-AATCATTGATATCTTTAGATATATCCACTTCT 33164 ||||| | || | || ||| |||| ||| | ||| || | ||| |||||| Sbjct 31257 TTTTCCTGAGGCTTCAGCTTTTCTTCCCAATGAACTGCATCAGCAGCCAAATCAACTTCT 31198 Query 33165 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 33224 || ||||||||||| || || || || | || ||||| ||||| || || | ||||||| Sbjct 31197 TCAACTGTCCAAAACGAGGCTTCAGCTTGCTTGTACATTTTCCATATATCTTTATATTGA 31138 Query 33225 ATTGGAAAAATAACAAATCTATTTGGATTTT 33255 |||||||| | |||||| || ||||||| Sbjct 31137 ATTGGAAATAAAACAAACCTTCGGGGATTTT 31107 >seq4963 Length=54722 Score = 132 bits (146), Expect = 6e-26 Identities = 220/315 (70%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 ||||| || || || ||| ||| || || | ||||||| |||| | |||||| | || Sbjct 22410 AGACCAATGCCACCAGCCCATTTTGAAATAATTGCGCATTGTTTAACAGTATCAAAAATT 22469 Query 63407 CCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63465 || || ||||||||| | ||| | ||| || ||||||||| ||||| || | | Sbjct 22470 CCTTCAATACTATCACTCTGCATAGCTAA-TAAAAAACAGCTTGACATCTGAGGTCTGGG 22528 Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 || || | ||| ||||| |||||||| || ||||||||||||||||| || | || ||| Sbjct 22529 GGTGCCAGAATTGAATAATGTAGGAGAGGCATGAGTAAACCATTTTTCTGACATTAAATT 22588 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || || ||||| | || | ||| ||| || || || | || | ||| || Sbjct 22589 ATATGTTTCTATAGCAGCATCAAGATCTTCACCATGTATACCAACAGATACTCTCATCAA 22648 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| ||||| || ||| | | || || ||||| | ||| || ||| |||| | Sbjct 22649 CATGTGTTGAGGCCTCTCAGCAGTTTTACCATTAATTTTTAGCAAATAAGATCTTTCAAG 22708 Query 63646 AGTTTTAAAACCAAA 63660 ||| | || | |||| Sbjct 22709 AGTCTAAATATCAAA 22723 Score = 116 bits (128), Expect = 5e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 63128 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63187 || ||||| || || ||||| ||||| | || | || | |||||||||| |||||| Sbjct 22086 TGCTCCTCTTTACCAGTATTTTTTTTTAAGTCTAAAAAGTCTATAATATCAGCATGCCAA 22145 Query 63188 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63247 || || ||||| ||||| || || || || ||||| ||||||||||| | ||||| Sbjct 22146 GGCTCTAAGTAGATGGCAATTGAGCCTGGTCGCTTGTTACCTCCCTGATCAACATATCTT 22205 Query 63248 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTC 63304 || || |||||| | ||||| ||||| ||||| || ||||| || |||||| ||| Sbjct 22206 GCAGTATTATTAAATACTCTTAACATGGGAATTATTCCATTCGAATGACCATTTGTC 22262 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 62129 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62188 ||||| || | ||| | |||||| || || || | | || | | | ||| |||| Sbjct 15725 TTCTTCATGTTATCGTCCCATAAGTTAAGATCAGTAAGATCTTTCATTAAATGTTTATTA 15784 Query 62189 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62248 || ||||||||||||||||| | ||||| | || |||||||| | || || ||||| Sbjct 15785 ACAACTTGAAATTCTCCAGAAAGCACTCTTCTAGAATAAATATTGTTAGTGTATGGTTCA 15844 Query 62249 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62308 | || ||||| || || | ||||||||| || || || || |||||||| || || ||| Sbjct 15845 ATTGATTCATTGTTGCCAAGAATTTGAGCTGTAGAGGCTGTTGGCATAGGAGCAACTAAT 15904 Query 62309 AAACTATTTCTAAGACC 62325 ||||| |||| || ||| Sbjct 15905 AAACTGTTTCGAACACC 15921 Score = 96.9 bits (106), Expect = 4e-15 Identities = 189/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 62842 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 62901 || ||||||||| ||| | || || ||| |||||||| ||| | || || ||||| || Sbjct 21392 TTTTTGATTACTTTTTCTATTGCAACTATCTTTATAAAGCATGTAAGGGGTTCCAGTCTC 21451 Query 62902 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT 62961 |||| ||||||| |||||| ||| | | |||| ||| | | |||| Sbjct 21452 TGTCTGGGATTCTAAAATCGCAAACCACAACTTTTGAGCTGGAATTTGTTTTCTATATCG 21511 Query 62962 CTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC-A 63020 | ||| ||||| ||| |||||| |||||| || || ||| |||| | | | Sbjct 21512 CCCTTCGCTTTCATATTTCTGATACAACTCTTCGAATTCTTC-CCCATAACAGTCAGCTA 21570 Query 63021 GTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63080 ||||||||||||| |||||||| || |||||| || | || | |||| | ||| Sbjct 21571 AACCAGGACATTCATGAGGACACATTAATGACCACATACCTTTCTCTTCTACTCTTCTCA 21630 Query 63081 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 63117 |||| || || |||| ||||||| | | ||| | ||| Sbjct 21631 TAAATAGGTCGGGAACCCAAAGACCAAAAAACAAATC 21667 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 62576 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC-AGCTTCTGG 62634 ||| | |||||||||||||| ||||||||||| ||| | || || ||||| ||| || || Sbjct 20219 AATACCTGAACACCAATACCTATAGGTCTATGCCTCATGTTTGA-ATTTCGAGCCTCAGG 20277 Query 62635 AATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCAC 62694 || || ||| | || |||||||| ||||| |||||||| || |||||| || Sbjct 20278 AACTGGGTAAAAGTTTCGATCTATAACCTTATTTAGATTTCTTGTTATCACTTTGGTGAC 20337 Query 62695 ATCCTTCAGTTTGAGAAAATCA 62716 || ||| | ||| ||||||| Sbjct 20338 ATACTTTAATTTCTTAAAATCA 20359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633466336913600