Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq24 154 1e-32 seq266 143 2e-29 seq12660 131 1e-25 >seq24 Length=448628 Score = 154 bits (170), Expect = 1e-32 Identities = 174/230 (76%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||||||||| || | || |||||| ||||||| | || || || | || Sbjct 62387 ATGCAAATATTTGTAAAAACCCTTACTGGTAAAACCATCACTTTAGAGGTTGAACCTGCT 62446 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || | |||| |||| ||| ||||||||||| |||||||| || Sbjct 62447 GATACGATTGA--CAACGTAAAAGCTAAAATTCAA-GACAAAGAAGGTATTCCACCAGAT 62503 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | |||||||| || || ||||||||||||| | | || | | || ||| Sbjct 62504 CAACAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGACTAC 62563 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||||||||| || ||| | || || | |||||||||| Sbjct 62564 AATATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGAGGAGG 62613 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || | || |||||| ||||||| | || || || | || Sbjct 61931 ATGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACGTTAGAGGTTGAACCTGCT 61990 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || | |||| |||| ||| ||||| ||||| |||||||| ||| Sbjct 61991 GATACGATTGA--CAACGTAAAAGCTAAAATTCAA-GACAAGGAAGGTATTCCACCAGAC 62047 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | |||||||| || || ||||||||||||| | | || | | |||||| Sbjct 62048 CAACAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGATTAC 62107 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||||||||| || ||| | || || | |||||||||| Sbjct 62108 AACATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGAGGAGG 62157 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || | || |||||| ||||||| | || || || | || Sbjct 62159 ATGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACGTTAGAGGTTGAACCTGCT 62218 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || | |||| |||| ||| ||||||||||| |||||||| || Sbjct 62219 GATACGATTGA--CAACGTAAAAGCTAAAATTCAA-GACAAAGAAGGTATTCCACCAGAT 62275 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | |||||||| || || ||||||||||||| | | || | | || ||| Sbjct 62276 CAACAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGACTAC 62335 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||||||||| || ||| | || || | |||||||||| Sbjct 62336 AATATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAGAGGAGG 62385 Score = 127 bits (140), Expect = 2e-24 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||||||||| || | || |||||| ||||||| | || || || | || Sbjct 62615 ATGCAAATATTTGTAAAAACCCTTACTGGTAAAACCATCACTTTAGAGGTTGAACCTGCT 62674 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || | |||| |||| ||| ||||| ||||| |||||||| ||| Sbjct 62675 GATACGATTGA--CAACGTAAAAGCTAAAATTCAA-GACAAGGAAGGTATTCCACCAGAC 62731 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | |||||||| || || |||||||| |||| | ||| | | || ||| Sbjct 62732 CAGCAGCGTTTAATTTTTGCTGGTAAGCAATTAGAGGATGGGAGAACTCTCAGTGACTAC 62791 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||||||||| || || ||| | || || Sbjct 62792 AACATTCAAAAAGAATCTACCCTTCATCTTGTCCT 62826 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| ||||| || || ||||| || | || ||||| ||||| || |||||||||| | | Sbjct 61804 AGGTATTCCGCCAGATCAACAACGTTTAATCTTTGCTGGCAAGCAGTTAGAAGATGGTAG 61863 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 || | | |||||||| ||||||||||||||||| || ||| | || || | |||| Sbjct 61864 AACATTAAGTGATTACAACATTCAAAAAGAATCCACCCTTCATCTTGTTCTTCGATTAAG 61923 Query 25220 AGGAGG 25225 |||||| Sbjct 61924 AGGAGG 61929 >seq266 Length=263831 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || ||||| || || ||| |||||||| | || || || | || Sbjct 46466 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCT 46407 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || || || |||| |||| || ||||||||||| || ||||| || Sbjct 46406 GATACTATTGA--CAATGTGAAAGCTAAAATCCAA-GACAAAGAAGGTATCCCACCAGAT 46350 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | |||||||| || ||||| |||||||||| | || || | ||||| Sbjct 46349 CAACAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACACTGAGTGATTAT 46290 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 || ||||||||||| || || || ||| |||| || | ||||||| ||| Sbjct 46289 AACATTCAAAAAGAGTCTACTCTCCATCTAGTTCTTCGATTAAGAGGGGGA 46239 Score = 134 bits (148), Expect = 1e-26 Identities = 155/206 (75%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || ||||| || || ||| |||| ||| | || || || | || Sbjct 46922 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCT 46863 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || || || |||| |||| || ||||||||||| |||||||| || Sbjct 46862 GATACTATTGA--CAATGTGAAAGCTAAAATCCAA-GACAAAGAAGGTATTCCACCAGAT 46806 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | |||||||| || ||||| |||||||||| | || || ||||||| Sbjct 46805 CAACAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTAT 46746 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || ||||||||||| || || || || Sbjct 46745 AACATTCAAAAAGAGTCAACCCTTCA 46720 Score = 134 bits (148), Expect = 1e-26 Identities = 155/206 (75%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || ||||| || || ||| |||| ||| | || || || | || Sbjct 47150 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCT 47091 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || || || |||| |||| || ||||||||||| |||||||| || Sbjct 47090 GATACTATTGA--CAATGTGAAAGCTAAAATCCAA-GACAAAGAAGGTATTCCACCAGAT 47034 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | |||||||| || ||||| |||||||||| | || || ||||||| Sbjct 47033 CAACAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTAT 46974 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || ||||||||||| || || || || Sbjct 46973 AACATTCAAAAAGAGTCAACCCTTCA 46948 Score = 129 bits (142), Expect = 5e-25 Identities = 154/206 (75%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || || ||||| || || ||| |||||||| | || || || | || Sbjct 46694 ATGCAAATATTCGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCT 46635 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || || || |||| |||| || ||||||||||| || ||||| || Sbjct 46634 GATACTATTGA--CAATGTGAAAGCTAAAATCCAA-GACAAAGAAGGTATCCCACCAGAT 46578 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | |||||||| || ||||| |||||||||| | || || ||||||| Sbjct 46577 CAACAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTAT 46518 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || ||||||||||| || || || || Sbjct 46517 AACATTCAAAAAGAGTCAACCCTTCA 46492 >seq12660 Length=10627 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| |||||||||| || || | || |||||| |||||||| | ||||| || | || Sbjct 9975 ATGAAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACATTAGAAGTTGAACCTGCT 9916 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || || | |||| |||| ||| ||||||||||| || ||| || Sbjct 9915 GATACAATTGAAAACGTAA---AAGCTAAAATTCAA-GACAAAGAAGGTTTTTTACCAGA 9860 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | |||||||| || || |||||||||||||| | || | | | || Sbjct 9859 CCAACAGCGTTTAATTTTTGCTGGTAAGGAATTAGAAGATGATAGAACATTAAGTTACTA 9800 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| ||||||||||||| || || ||| | || || | |||||||||| Sbjct 9799 CAATGTTCAAAAAGAATCTACTCTTCATCTTGTTCTTCGATTAAGAGGAGG 9749 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || | || |||||| |||||||| | ||||| || || Sbjct 9522 ATGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACATTAGAAGTTGAACTTGCT 9463 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || || | |||| || ||| |||||| |||| || ||| || Sbjct 9462 GATACAATTGAAAACGTAA---AAGCTCGAATTCAA-GACAAAAAAGGTTTTTTACCAGA 9407 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | |||||||| || || |||||||||||||| | || | | | || Sbjct 9406 CCAACAGCGTTTAATTTTTGCTGGTAAGGAATTAGAAGATGATAGAACATTAAGTTACTA 9347 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGA 25223 |||| ||||||||||||| || || ||| | || || | |||||||| Sbjct 9346 CAATGTTCAAAAAGAATCTACTCTTCATCTTGTTCTTCGATTAAGAGGA 9298 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 |||| ||| | |||||||| || || | || |||||| ||||||| | || || || Sbjct 9300 GGAAGTATGAATATATTTGTGAAAACCCTTACTGGTAAAACCATCACGTTAGAGGTTGAA 9241 Query 25053 TCGTCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 | |||| || || || |||| || |||| |||| ||||||||||| |||||| Sbjct 9240 CCTGCTGATACAATTGACAACGTGAAAGCTAAAATTCAC-GACAAAGAAGGTGTTCCACT 9182 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || ||||| | | ||||||| || || | |||||| |||| | ||| | | || Sbjct 9181 AGATCAACAAAGTTTGTTTTTTGCTGGTAAGGAGTTAGAAAATGAAAGAACTCTCAGTGA 9122 Query 25172 TTACAATATTCAAAAAGAAT 25191 ||||||||||||||| ||| Sbjct 9121 CTACAATATTCAAAAAAAAT 9102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433217538734540