Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2421 150 2e-31 >seq2421 Length=99546 Score = 150 bits (166), Expect = 2e-31 Identities = 213/298 (71%), Gaps = 6/298 (2%) Strand=Plus/Minus Query 93169 TTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGC 93228 ||| || ||||||||||| | |||||| || |||||||| || |||||||| || || Sbjct 31725 TTTTTTAAGCCAAAATATAGCTGCAAAAGATCCTGAAAAAAAAATTCCTTCCACTGCAGC 31666 Query 93229 AAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCA 93288 |||||| |||| |||||| | ||| || ||| || | |||||||||| ||||| Sbjct 31665 AAATGCAACAACACGTTCAGAGAAAGAAGCACAATCTTTGTTAATCCATTTTAGTGCCCA 31606 Query 93289 ATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTC 93348 | | |||||||| | || ||| || | ||||| || || ||||||| ||| | || Sbjct 31605 AACTGCTTTTTTTTGAACACAGGGCATGGTTTCAATTGCATTAAATA---AATTTGACTT 31549 Query 93349 GTC---CGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATT 93405 || || |||| ||| ||||| || | | |||||||||||| || |||| || Sbjct 31548 TTCTATCGGATCTTTAATGAGAGTATCAATGAGTAAAGAATACATTTCTGAGTGGATGTT 31489 Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463 || ||||||||||| || || || || ||| ||||| | | || ||||||||| Sbjct 31488 TTCAATTGCAATTTGAAACCCATAAAATGCTCTTGCTTCTGGTAGTTGAACTTCTTGA 31431 Score = 109 bits (120), Expect = 6e-19 Identities = 173/245 (71%), Gaps = 10/245 (4%) Strand=Plus/Minus Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 |||||| ||| || |||||||| || || |||||| || ||||| || || | | Sbjct 31330 AAATCT---TACAAGGTTTTCATTAACAATTCCATCGCTAGCAGCAAAGAATGCAAGAAC 31274 Query 93526 ATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC---CCAATCGGATAGATCTTT 93582 ||| ||||||| || || | | || ||||| || ||||| | ||| Sbjct 31273 ATGAGAGATAAAATACTTTTCCTGAGGCTTCAGCTTTTCTTCCCAATGAACTGCATCAGC 31214 Query 93583 TGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCA 93642 | | ||| |||||||| || ||||||||||| ||||| |||| |||||||| | ||| Sbjct 31213 AGCCAAATCAACTTCTTCAACTGTCCAAAACGAGGCTTCAGCTTGCTTGTACATTTTCCA 31154 Query 93643 TATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGG--TTATCTTTTAGTAAC 93700 ||| |||| ||||||||||||||||| ||||| | || ||| || ||| ||| ||| Sbjct 31153 TATATCTTTATATTGAATTGGAAATAAAACAAACC--TTCGGGGATTTTCTCTTAATAAT 31096 Query 93701 GGCTC 93705 || || Sbjct 31095 GGTTC 31091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556715208743840