Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq266 105 6e-18 seq24 89.7 4e-13 >seq266 Length=263831 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| ||||| | || |||||||||||||| |||| ||||| Sbjct 46922 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCT 46863 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | || ||| ||||| ||||||||||| |||| |||||| Sbjct 46862 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 46803 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| ||| || ||||| || |||||| | ||| || ||||||||| Sbjct 46802 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAAC 46743 Query 111367 ATACAAAAAGAATCTACACTACA 111389 || |||||||| || || || || Sbjct 46742 ATTCAAAAAGAGTCAACCCTTCA 46720 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| ||||| | || |||||||||||||| |||| ||||| Sbjct 47150 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATTACATTGGAGGTTGAACCTGCT 47091 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | || ||| ||||| ||||||||||| |||| |||||| Sbjct 47090 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 47031 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| ||| || ||||| || |||||| | ||| || ||||||||| Sbjct 47030 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAAC 46971 Query 111367 ATACAAAAAGAATCTACACTACA 111389 || |||||||| || || || || Sbjct 46970 ATTCAAAAAGAGTCAACCCTTCA 46948 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| ||||| | || ||||||||||| || |||| ||||| Sbjct 46466 ATGCAAATATTTGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCT 46407 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | || ||| ||||| ||||||||||| | || |||||| Sbjct 46406 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 46347 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| ||| || ||||| || |||||| | ||| || |||||||| Sbjct 46346 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACACTGAGTGATTATAAC 46287 Query 111367 ATACAAAAAGAATCTACACTACATTTAGT 111395 || |||||||| ||||| || ||| |||| Sbjct 46286 ATTCAAAAAGAGTCTACTCTCCATCTAGT 46258 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || ||||| | || ||||||||||| || |||| ||||| Sbjct 46694 ATGCAAATATTCGTTAAAACTTTAACTGGCAAAACCATCACATTGGAGGTCGAACCTGCT 46635 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | || ||| ||||| ||||||||||| | || |||||| Sbjct 46634 GATACTATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 46575 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| ||| || ||||| || |||||| | ||| || ||||||||| Sbjct 46574 CAACGTTTGATTTTTGCTGGTAAACAGTTAGAAGATGGCAGAACCCTGAGCGATTATAAC 46515 Query 111367 ATACAAAAAGAATCTACACTACA 111389 || |||||||| || || || || Sbjct 46514 ATTCAAAAAGAGTCAACCCTTCA 46492 >seq24 Length=448628 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| ||||| | || || |||||||| || | || ||||| Sbjct 62159 ATGCAAATATTTGTGAAAACCCTTACTGGTAAAACCATCACGTTAGAGGTTGAACCTGCT 62218 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | | |||||| |||||| ||||||||||| |||| |||||| Sbjct 62219 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 62278 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | | |||| ||| || || ||||| |||||| || ||| | || || ||| Sbjct 62279 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGACTACAAT 62338 Query 111367 ATACAAAAAGAATCTACACTACAT 111390 || ||||||||||| || || ||| Sbjct 62339 ATTCAAAAAGAATCCACCCTTCAT 62362 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| ||||| | || || |||||||| || | || ||||| Sbjct 62387 ATGCAAATATTTGTAAAAACCCTTACTGGTAAAACCATCACTTTAGAGGTTGAACCTGCT 62446 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | | |||||| |||||| ||||||||||| |||| |||||| Sbjct 62447 GATACGATTGACAACGTAAAAGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 62506 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | | |||| ||| || || ||||| |||||| || ||| | || || ||| Sbjct 62507 CAGCGTTTAATTTTTGCTGGTAAGCAATTAGAAGATGGTAGAACATTAAGTGACTACAAT 62566 Query 111367 ATACAAAAAGAATCTACACTACAT 111390 || ||||||||||| || || ||| Sbjct 62567 ATTCAAAAAGAATCCACCCTTCAT 62590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422932161287200